Non-Coding RNA Search

Ss1.1-rfce27c_i14.5

Sequence:


               
               TCACACATACACACATTCCTGGATACCAACCCTTTCTACAGGCCCATTTTCTTCCATGTT
TTATGCCCTCAGAACGTGATAAACCATGGCCGACTCATTAACTTCACTTTGGGGCCAATT
ACTTGAAAAAGCCACAGAAAATGTAAACTGCTCGCCTTATCCCCCCCCCCCAAGCCCCCA
AACTTTTATGTTCATGTGGCAGGGAGCAGTAGAAAATTCTGGATTAGATTATGAACACTG
AACTTGAAGCTAATGTTAGAATAGTGGTTAACAGAGCTAAGTAAGGCTAACCATTCAAAA
GAACACGGGCTGTGGGTAAATTAGCTTTGCTCTTTAGATGCAGGTTACTGAGGGCAGTAG
GTGCCTAGTATATGTTAACTGTTCTTGAAAAAAAATAAAACATTAAATAACAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACACATACACACATTCCTGGATACCAACCCTTTCTACAGGCCCATTTTCTTCCATGTT
TTATGCCCTCAGAACGTGATAAACCATGGCCGACTCATTAACTTCACTTTGGGGCCAATT
ACTTGAAAAAGCCACAGAAAATGTAAACTGCTCGCCTTATCCCCCCCCCCCAAGCCCCCA
AACTTTTATGTTCATGTGGCAGGGAGCAGTAGAAAATTCTGGATTAGATTATGAACACTG
AACTTGAAGCTAATGTTAGAATAGTGGTTAACAGAGCTAAGTAAGGCTAACCATTCAAAA
GAACACGGGCTGTGGGTAAATTAGCTTTGCTCTTTAGATGCAGGTTACTGAGGGCAGTAG
GTGCCTAGTATATGTTAACTGTTCTTGAAAAAAAATAAAACATTAAATAACAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               114-232, - strand, RNAz p=0.593452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-232, - strand, RNAz p=0.593452

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-419, gnl|bosTau2|chr20 (35941838-35942249)
               

               
               1-419, gnl|Hg17|chr5 (11025351-11024948)
               

               
               1-419, gnl|Mm7|chr15 (31136334-31136754)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-419, gnl|bosTau2|chr20 (35941838-35942249)
               

               
               1-419, gnl|Hg17|chr5 (11025351-11024948)
               

               
               1-419, gnl|Mm7|chr15 (31136334-31136754)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)

	1-419, gnl\|bosTau2\|chr20 (35941838-35942249)
	1-419, gnl\|Hg17\|chr5 (11025351-11024948)
	1-419, gnl\|Mm7\|chr15 (31136334-31136754)