Non-Coding RNA Search

Ss1.1-rfce28c_d24.5

Sequence:


               
               GTAACGTCAAAATGAGTACTATAAAAGATTAATATAAAATGATTTAGAAGACCGATGTAT
ATATTAGGTAGAAGTTAATATTTGGTGTCTGGCAAAAGGACCACATGTAAAAGTGATGTC
AAACAGCCAGTGGTATGGAATAATTTAAATATAACTCATTATATCAAAATAATATGTCTT
AAAAGAGAAAAAAACTTTTGGTGGAAAAACAACAAAATTAGATTTTCACATGGAGAAAAT
AACTTGATAGTATTTAATTGAAATCTGTTCAATTTTAAAAGTCTAGTTTATAAAATGATA
TTATACAAAAATAGAACAATGAATTTAAATTAATATATCTATGAACTATACATGAAAGAT
AAGTTCATTTACCTTCTTTTCTAAGATGTATTAAACATAAGTTGCACACACTCCAACTAT
TACCATGTTTTTGCATATGAAGAGAGGAAATACTGTTTTTTTAAGTTATTAAATGTGAAA
TTGATAGTTCTGTATCATCTTATTTATAAAAGTTACATTATTTCCATGAAAATGTGATTA
GCATTGACAATGCATTTGTTAGACTTTTTACTTCTTTACCTGATATTATTTATTACATTG
ATATAGAAATATATGATTCATAAGTTTTAGGATTTCATATAGTATAATTTAATTTCACCT
GCTTTGAAGGTTGATCCAGTTGATTGTTAAATGAAAATACTTCCCCTCTCATTTAACATA
CCACAGCTCTATTTTACCTTTCACTGAATGTTCTCAGTATTTTTTGCTATCTAAAATAAT
TGAAAAATTGAAGCTTACTTTTACCTTTGACAATAAACTAAATTATCTTGCTTACATGGA
AAAATGCTGTTTAGAACTGTCCTATAAATATAGATAAAAAAATTAATTAGCTCATCAAGA
TTCTTTATAATTCTGCCATTCTCCCAAGGAATACTACATATGCAATCTTTATTTTTTATT
TCTTTGTTGCTTATCAGAGTGCATGGATCCTCATCTGTTTATAAGACTGCAGCATAATAT
TAAAATGCAAATAAATATTCTGATCAATTAAAATGGAAAAGAGTAGTAAATTAAGGTGAT
CCGCCATATGTTATCACTCTTGAACTTTATCATCTGTGAAAATGGGAGGTTAAAAATGTC
TCACTGGATTATTGTTTAAATCAATTTAAAAATTTTTTTAAACTTTGAAAATAGTAATGT
ACTAAATATATGTTTACTATTCTTAGTATTTCCTTCACAAACTATTCTTTGGAAAGATGA
AGCTAAACATGAAATTTTAGTATCATATTCTTTACGGAAGACTGTATGATTAAAGGTTTA
TGGTAATTTCAGAATCATTTCATATTAAGAATTTCATTCAACTTAAGTTCCACTTCGTTG
TTCTCATTATAAAATATAATTGTAAAGTGACTTGTTTTATATTCTTATGTTATCTACAAA
TAAATATACCTGCTCTTGAATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAACGTCAAAATGAGTACTATAAAAGATTAATATAAAATGATTTAGAAGACCGATGTAT
ATATTAGGTAGAAGTTAATATTTGGTGTCTGGCAAAAGGACCACATGTAAAAGTGATGTC
AAACAGCCAGTGGTATGGAATAATTTAAATATAACTCATTATATCAAAATAATATGTCTT
AAAAGAGAAAAAAACTTTTGGTGGAAAAACAACAAAATTAGATTTTCACATGGAGAAAAT
AACTTGATAGTATTTAATTGAAATCTGTTCAATTTTAAAAGTCTAGTTTATAAAATGATA
TTATACAAAAATAGAACAATGAATTTAAATTAATATATCTATGAACTATACATGAAAGAT
AAGTTCATTTACCTTCTTTTCTAAGATGTATTAAACATAAGTTGCACACACTCCAACTAT
TACCATGTTTTTGCATATGAAGAGAGGAAATACTGTTTTTTTAAGTTATTAAATGTGAAA
TTGATAGTTCTGTATCATCTTATTTATAAAAGTTACATTATTTCCATGAAAATGTGATTA
GCATTGACAATGCATTTGTTAGACTTTTTACTTCTTTACCTGATATTATTTATTACATTG
ATATAGAAATATATGATTCATAAGTTTTAGGATTTCATATAGTATAATTTAATTTCACCT
GCTTTGAAGGTTGATCCAGTTGATTGTTAAATGAAAATACTTCCCCTCTCATTTAACATA
CCACAGCTCTATTTTACCTTTCACTGAATGTTCTCAGTATTTTTTGCTATCTAAAATAAT
TGAAAAATTGAAGCTTACTTTTACCTTTGACAATAAACTAAATTATCTTGCTTACATGGA
AAAATGCTGTTTAGAACTGTCCTATAAATATAGATAAAAAAATTAATTAGCTCATCAAGA
TTCTTTATAATTCTGCCATTCTCCCAAGGAATACTACATATGCAATCTTTATTTTTTATT
TCTTTGTTGCTTATCAGAGTGCATGGATCCTCATCTGTTTATAAGACTGCAGCATAATAT
TAAAATGCAAATAAATATTCTGATCAATTAAAATGGAAAAGAGTAGTAAATTAAGGTGAT
CCGCCATATGTTATCACTCTTGAACTTTATCATCTGTGAAAATGGGAGGTTAAAAATGTC
TCACTGGATTATTGTTTAAATCAATTTAAAAATTTTTTTAAACTTTGAAAATAGTAATGT
ACTAAATATATGTTTACTATTCTTAGTATTTCCTTCACAAACTATTCTTTGGAAAGATGA
AGCTAAACATGAAATTTTAGTATCATATTCTTTACGGAAGACTGTATGATTAAAGGTTTA
TGGTAATTTCAGAATCATTTCATATTAAGAATTTCATTCAACTTAAGTTCCACTTCGTTG
TTCTCATTATAAAATATAATTGTAAAGTGACTTGTTTTATATTCTTATGTTATCTACAAA
TAAATATACCTGCTCTTGAATCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-788, gnl|bosTau2|chr27 (12860826-12860055)
               

               
               1-788, gnl|Hg17|chr8 (17023071-17023860)
               

               
               1-788, gnl|Mm7|chr8 (39176001-39176955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr27 (12860826-12860055)
               

               
               1-788, gnl|Hg17|chr8 (17023071-17023860)
               

               
               1-788, gnl|Mm7|chr8 (39176001-39176955)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fco (1.57208)
               

               
               ret (0.643666)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.57208)
               

               
               ret (0.643666)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               mcp (0.170648)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)

	1-788, gnl\|bosTau2\|chr27 (12860826-12860055)
	1-788, gnl\|Hg17\|chr8 (17023071-17023860)
	1-788, gnl\|Mm7\|chr8 (39176001-39176955)

	fco (1.57208)
	ret (0.643666)
	fce (0.271592)
	tra (0.246184)
	ece (0.229305)
	fcc (0.197785)
	mcp (0.170648)
	bfe (0.149858)
	hyp (0.142837)
	pty (0.142714)