Non-Coding RNA Search

Ss1.1-rfce28c_l4.5

Sequence:


               
               TGCTAGATGGCTTGTTCTCTCTTCTATTTTCCTGCATTCATTTCACTACGCCTCTTTTAC
TTTTTGTCTCTGTGGACAAAGGTTTGTACATCGACTCTGGATGTATGGTGACTGTTTGGA
AGTACCGATATATTATCTAATTCAAATCACTCTAGAGGCAACTCAAAGACCATCACCCTT
GGCCAACCACCAGTCCTTTATGTGCTCCATGCAGAGTGGGAATGCTTGGTTCCACAAATG
CCTTGAGGGAAAAAAAATTAAAACAGGGAATCTTTGCATGATGGTGTGTAAAAACTTGGT
CCAGTATGTTTTTTTTGATGCCAGTGCGTTGCTGTGGTGTGATGTACACACTCTACTTGG
CAGTCTTGTTTTGTGTCTGTCTGCCAGTATGTTTCTTCTGTGTGTTTTGTGTCTCAAAAT
AGAACCTTGTCATTGAAATAGAACTGAATGTCCTCCAGCTACCTTAAATCTTGTCTTAAA
TCCAACAAAAACAAACCAAAACAAAGAACAACCTATGGGCAAAGTTTGCCATCTTGACAA
TTGCAGTTGACTTGATTGGAAATGAAAATCCTGAGTAGCTTAGGCATGGTGGTGGCCAAC
TGTTTGGGTCCGGATTATGATATATCGGTATTCTCTGATGCCTCANATTANAACTCATTT
GCTTGGTTCGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTAGATGGCTTGTTCTCTCTTCTATTTTCCTGCATTCATTTCACTACGCCTCTTTTAC
TTTTTGTCTCTGTGGACAAAGGTTTGTACATCGACTCTGGATGTATGGTGACTGTTTGGA
AGTACCGATATATTATCTAATTCAAATCACTCTAGAGGCAACTCAAAGACCATCACCCTT
GGCCAACCACCAGTCCTTTATGTGCTCCATGCAGAGTGGGAATGCTTGGTTCCACAAATG
CCTTGAGGGAAAAAAAATTAAAACAGGGAATCTTTGCATGATGGTGTGTAAAAACTTGGT
CCAGTATGTTTTTTTTGATGCCAGTGCGTTGCTGTGGTGTGATGTACACACTCTACTTGG
CAGTCTTGTTTTGTGTCTGTCTGCCAGTATGTTTCTTCTGTGTGTTTTGTGTCTCAAAAT
AGAACCTTGTCATTGAAATAGAACTGAATGTCCTCCAGCTACCTTAAATCTTGTCTTAAA
TCCAACAAAAACAAACCAAAACAAAGAACAACCTATGGGCAAAGTTTGCCATCTTGACAA
TTGCAGTTGACTTGATTGGAAATGAAAATCCTGAGTAGCTTAGGCATGGTGGTGGCCAAC
TGTTTGGGTCCGGATTATGATATATCGGTATTCTCTGATGCCTCANATTANAACTCATTT
GCTTGGTTCGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.863305
               

               
               280-399, + strand, RNAz p=0.798295

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.863305
               

               
               280-399, + strand, RNAz p=0.798295

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-501, gnl|bosTau2|chr13 (1752188-1751692)
               

               
               1-501, gnl|canFam2|chr24 (15010947-15009986)
               

               
               1-501, gnl|dasNov1|scaffold_98 (138553-137590)
               

               
               1-501, gnl|echTel1|scaffold_319916 (36749-35796)
               

               
               1-501, gnl|galGal2|chr14 (18578508-18579493)
               

               
               1-501, gnl|hg17|chr20 (10224386-10225346)
               

               
               1-501, gnl|Hg17|chr20 (10224825-10225326)
               

               
               1-501, gnl|mm7|chr2 (136513400-136514357)
               

               
               1-501, gnl|Mm7|chr2 (136513846-136514558)
               

               
               1-501, gnl|monDom2|scaffold_1 (42475821-42476758)
               

               
               1-501, gnl|oryCun1|scaffold_202760 (16053-15092)
               

               
               1-501, gnl|panTro1|chr21 (10090371-10091335)
               

               
               1-501, gnl|rheMac2|chr10 (43569841-43570817)
               

               
               1-501, gnl|rn3|chr3 (124790594-124791551)
               

               
               1-501, gnl|xenTro1|scaffold_239 (1508479-1509290)
               


               
               560-670, gnl|bosTau2|chr13 (1751694-1751585)
               

               
               560-670, gnl|Hg17|chr20 (10225324-10225489)
               

               
               560-670, gnl|Mm7|chr2 (136514556-136514665)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-501, gnl|bosTau2|chr13 (1752188-1751692)
               

               
               1-501, gnl|canFam2|chr24 (15010947-15009986)
               

               
               1-501, gnl|dasNov1|scaffold_98 (138553-137590)
               

               
               1-501, gnl|echTel1|scaffold_319916 (36749-35796)
               

               
               1-501, gnl|galGal2|chr14 (18578508-18579493)
               

               
               1-501, gnl|hg17|chr20 (10224386-10225346)
               

               
               1-501, gnl|Hg17|chr20 (10224825-10225326)
               

               
               1-501, gnl|mm7|chr2 (136513400-136514357)
               

               
               1-501, gnl|Mm7|chr2 (136513846-136514558)
               

               
               1-501, gnl|monDom2|scaffold_1 (42475821-42476758)
               

               
               1-501, gnl|oryCun1|scaffold_202760 (16053-15092)
               

               
               1-501, gnl|panTro1|chr21 (10090371-10091335)
               

               
               1-501, gnl|rheMac2|chr10 (43569841-43570817)
               

               
               1-501, gnl|rn3|chr3 (124790594-124791551)
               

               
               1-501, gnl|xenTro1|scaffold_239 (1508479-1509290)
               


               
               560-670, gnl|bosTau2|chr13 (1751694-1751585)
               

               
               560-670, gnl|Hg17|chr20 (10225324-10225489)
               

               
               560-670, gnl|Mm7|chr2 (136514556-136514665)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	40-159, - strand, RNAz p=0.863305
	280-399, + strand, RNAz p=0.798295

	1-501, gnl\|bosTau2\|chr13 (1752188-1751692)
	1-501, gnl\|canFam2\|chr24 (15010947-15009986)
	1-501, gnl\|dasNov1\|scaffold_98 (138553-137590)
	1-501, gnl\|echTel1\|scaffold_319916 (36749-35796)
	1-501, gnl\|galGal2\|chr14 (18578508-18579493)
	1-501, gnl\|hg17\|chr20 (10224386-10225346)
	1-501, gnl\|Hg17\|chr20 (10224825-10225326)
	1-501, gnl\|mm7\|chr2 (136513400-136514357)
	1-501, gnl\|Mm7\|chr2 (136513846-136514558)
	1-501, gnl\|monDom2\|scaffold_1 (42475821-42476758)
	1-501, gnl\|oryCun1\|scaffold_202760 (16053-15092)
	1-501, gnl\|panTro1\|chr21 (10090371-10091335)
	1-501, gnl\|rheMac2\|chr10 (43569841-43570817)
	1-501, gnl\|rn3\|chr3 (124790594-124791551)
	1-501, gnl\|xenTro1\|scaffold_239 (1508479-1509290)

	560-670, gnl\|bosTau2\|chr13 (1751694-1751585)
	560-670, gnl\|Hg17\|chr20 (10225324-10225489)
	560-670, gnl\|Mm7\|chr2 (136514556-136514665)