Non-Coding RNA Search

Ss1.1-rfce31c_d7.5

Sequence:


               
               GCCTGTGTATAGAGATATAAATAGAGCGAAAGCTATAAGAACTAAATTTGCTAATGACAT
AGTCTTAACCCAAATGCTATTTATTTCTGAGTCGCCCTCGCCCATCCTCTGCAAACAAGT
CGATATCACTCCGTTTTCTTCTCCACCCTCTTGGCCTCTGTCCAGAATCCAAACCCTGCC
CTCTCCCCATAGGAGATGACCTGCAGGAGATGGAAGGAAGGGGCCCCAGCTGGGGGACCA
GAGGGGCACCAGGGATGCCCTTCCTCCAGGCCAGAGCTGGGGGTGGGGGTGGAGGGGGGG
TAACTAGACTCTCCGTTTGTACATTTTCCATTTGGGAATTTTGAGTTCCAATGGTTGTAA
AACTTAATTTCTCCCCCGTTTTTATATATATATATTTTTTAGAGTTGAGTTTTTATTTAT
TATTAAAAACGAAAACACCCTGCCAAGCCCCAGTGTCCCCTTGGGGAGCATCTGCAGTCT
GGTGGTCTCAGGGCCTGGGGTGGAGGGGGGGGCCAGCCACAGACTCTCACTCTGACGCAT
GGACTCGAGAGGTGACACCACTTTGTGTGAATAAAGTACATATGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGTGTATAGAGATATAAATAGAGCGAAAGCTATAAGAACTAAATTTGCTAATGACAT
AGTCTTAACCCAAATGCTATTTATTTCTGAGTCGCCCTCGCCCATCCTCTGCAAACAAGT
CGATATCACTCCGTTTTCTTCTCCACCCTCTTGGCCTCTGTCCAGAATCCAAACCCTGCC
CTCTCCCCATAGGAGATGACCTGCAGGAGATGGAAGGAAGGGGCCCCAGCTGGGGGACCA
GAGGGGCACCAGGGATGCCCTTCCTCCAGGCCAGAGCTGGGGGTGGGGGTGGAGGGGGGG
TAACTAGACTCTCCGTTTGTACATTTTCCATTTGGGAATTTTGAGTTCCAATGGTTGTAA
AACTTAATTTCTCCCCCGTTTTTATATATATATATTTTTTAGAGTTGAGTTTTTATTTAT
TATTAAAAACGAAAACACCCTGCCAAGCCCCAGTGTCCCCTTGGGGAGCATCTGCAGTCT
GGTGGTCTCAGGGCCTGGGGTGGAGGGGGGGGCCAGCCACAGACTCTCACTCTGACGCAT
GGACTCGAGAGGTGACACCACTTTGTGTGAATAAAGTACATATGGACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               191-297, + strand, RNAz p=0.99742

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-297, + strand, RNAz p=0.99742

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-588, gnl|bosTau2|chr14 (3234657-3235247)
               

               
               1-588, gnl|Hg17|chr8 (145725906-145725375)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr14 (3234657-3235247)
               

               
               1-588, gnl|Hg17|chr8 (145725906-145725375)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.543183)
               

               
               col (0.195008)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               col (0.195008)
               

               
               eru (0.120048)

	1-588, gnl\|bosTau2\|chr14 (3234657-3235247)
	1-588, gnl\|Hg17\|chr8 (145725906-145725375)