Non-Coding RNA Search

Ss1.1-rfce34c_p8.5

Sequence:


               
               CAGCTGGCAGAGGGGTGGGGGGCCAAGGCATGGGGTTGAAGAATTTCACTTTTACTCACA
TCATACACTGGGAATTTCGGGGGCAGGGGAACCCTGGGCCACTCCCCCAGTATTAAAGGG
AAGCCAAACTGTGAATGTGACCGCCAGCGCACTGCTGGCCCTGTCACCAGAGCCAGCTTT
CTTCCCCGGGGAACCACTGGCCCGATGGCCTCCAGCCTCAAGGAGGCCCGGCCCGCCTTC
GGGTCACGCTGGTTCCCACGGGCAGGCGTGGGAGAGCTTTGGGGGCAAAGGTGACCGTCG
GGGTGGGGAAACACAACTTGCCCGAGCAGCAGGCAGGGCCCTGGGAAACGTGTAAGTTAA
GGACACCAGTAATAACAATAGTATTATTTTTTTTGTAAGGGAAAAATCAATATGTACATT
CTGAAATCATTTTCTCTGTAAATGGTTGGATTTCATTTCACCCTTAAAGGGATGTTTAAA
GGAAAAGATAATATTAATAATAAAAGCAGCTACAAAGTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGGCAGAGGGGTGGGGGGCCAAGGCATGGGGTTGAAGAATTTCACTTTTACTCACA
TCATACACTGGGAATTTCGGGGGCAGGGGAACCCTGGGCCACTCCCCCAGTATTAAAGGG
AAGCCAAACTGTGAATGTGACCGCCAGCGCACTGCTGGCCCTGTCACCAGAGCCAGCTTT
CTTCCCCGGGGAACCACTGGCCCGATGGCCTCCAGCCTCAAGGAGGCCCGGCCCGCCTTC
GGGTCACGCTGGTTCCCACGGGCAGGCGTGGGAGAGCTTTGGGGGCAAAGGTGACCGTCG
GGGTGGGGAAACACAACTTGCCCGAGCAGCAGGCAGGGCCCTGGGAAACGTGTAAGTTAA
GGACACCAGTAATAACAATAGTATTATTTTTTTTGTAAGGGAAAAATCAATATGTACATT
CTGAAATCATTTTCTCTGTAAATGGTTGGATTTCATTTCACCCTTAAAGGGATGTTTAAA
GGAAAAGATAATATTAATAATAAAAGCAGCTACAAAGTCAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               116-230, - strand, RNAz p=0.786946
               

               
               240-357, - strand, RNAz p=0.982068

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-230, - strand, RNAz p=0.786946
               

               
               240-357, - strand, RNAz p=0.982068

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-519, gnl|bosTau2|chr5 (69928641-69929165)
               

               
               1-519, gnl|Hg17|chr22 (38212156-38212695)
               

               
               1-519, gnl|Mm7|chr15 (80299513-80299996)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-519, gnl|bosTau2|chr5 (69928641-69929165)
               

               
               1-519, gnl|Hg17|chr22 (38212156-38212695)
               

               
               1-519, gnl|Mm7|chr15 (80299513-80299996)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.543183)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               cbe (0.239234)
               

               
               fhi (0.169578)

	116-230, - strand, RNAz p=0.786946
	240-357, - strand, RNAz p=0.982068

	1-519, gnl\|bosTau2\|chr5 (69928641-69929165)
	1-519, gnl\|Hg17\|chr22 (38212156-38212695)
	1-519, gnl\|Mm7\|chr15 (80299513-80299996)