Non-Coding RNA Search

Ss1.1-rfhi4004b_c5.5

Sequence:


               
               AGATCAGGAGTTCCAGATGGACCCTTTGGGGTGGGGGGAGAAAATAGCAAGAAACAAACT
CTTTTTCTGTGTAAAAACATCAGTCCTTTGGGAGTGGGGTGGGAAATGGGGGTAGGACAT
CATTAACTCTAGCTATTTTAGTTTCTGAAATTTCATAACCTCAGTAGACACCAGCACAAA
TTTCAGCTTTTCAGTCTACCACCACTCCCTCCTTCACTGATGAGACGTTAGCAGCTTGTA
TAGATTTTGGTCAGGTGAGCAAATCTGAGCTCTCCTAAACCTCGCTAGAGATAGCTGGTG
GTTCTCACTTACTCAATGACACCTTGCACTGGGAATAATGCGAGCCTTGGTCACATCTTC
CCACAGCTCCAAACTTTGAATTACACAACCAGGTAGACCAAGCCATGGAAAAATTTGCAC
CACTGTGTCCCATGAAAATGTTTCAATGTTTAGTTTAGGTATTGCTAACTTGTGCTATTA
ACCTTTTGACAAGCGTGTAGTATTGTTTGTTTTTGGGTTTGTTTTTGATTTATAACCATT
TAGTAGTCCCCAGCTAGCTACCAGTACAGATTTTTACCCCATGGGTAGGATTCTACTATC
AAGCCACATAACAAAGCACACTAATCCAGACACTGAAAATGGAAAATATGAACCAAAAAG
GAAATTTACACCGATAAGTTGAACAAACTCTCCATTTTTGATATTTGCATGCACCCCTAT
GGACTGGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCAGGAGTTCCAGATGGACCCTTTGGGGTGGGGGGAGAAAATAGCAAGAAACAAACT
CTTTTTCTGTGTAAAAACATCAGTCCTTTGGGAGTGGGGTGGGAAATGGGGGTAGGACAT
CATTAACTCTAGCTATTTTAGTTTCTGAAATTTCATAACCTCAGTAGACACCAGCACAAA
TTTCAGCTTTTCAGTCTACCACCACTCCCTCCTTCACTGATGAGACGTTAGCAGCTTGTA
TAGATTTTGGTCAGGTGAGCAAATCTGAGCTCTCCTAAACCTCGCTAGAGATAGCTGGTG
GTTCTCACTTACTCAATGACACCTTGCACTGGGAATAATGCGAGCCTTGGTCACATCTTC
CCACAGCTCCAAACTTTGAATTACACAACCAGGTAGACCAAGCCATGGAAAAATTTGCAC
CACTGTGTCCCATGAAAATGTTTCAATGTTTAGTTTAGGTATTGCTAACTTGTGCTATTA
ACCTTTTGACAAGCGTGTAGTATTGTTTGTTTTTGGGTTTGTTTTTGATTTATAACCATT
TAGTAGTCCCCAGCTAGCTACCAGTACAGATTTTTACCCCATGGGTAGGATTCTACTATC
AAGCCACATAACAAAGCACACTAATCCAGACACTGAAAATGGAAAATATGAACCAAAAAG
GAAATTTACACCGATAAGTTGAACAAACTCTCCATTTTTGATATTTGCATGCACCCCTAT
GGACTGGCTGTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-732, gnl|bosTau2|chr9 (16061340-16062072)
               

               
               3-732, gnl|Hg17|chr6 (118744745-118745472)
               

               
               3-732, gnl|Mm7|chr10 (52927802-52928621)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-732, gnl|bosTau2|chr9 (16061340-16062072)
               

               
               3-732, gnl|Hg17|chr6 (118744745-118745472)
               

               
               3-732, gnl|Mm7|chr10 (52927802-52928621)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)
               

               
               spc (0.113366)

	3-732, gnl\|bosTau2\|chr9 (16061340-16062072)
	3-732, gnl\|Hg17\|chr6 (118744745-118745472)
	3-732, gnl\|Mm7\|chr10 (52927802-52928621)

	hyp (0.285673)
	ebs (0.236602)
	eye (0.170503)
	fhi (0.169578)
	cov (0.132153)
	spc (0.113366)