Non-Coding RNA Search

Ss1.1-rfhi4005b_d5.5

Sequence:


               
               TGCCTAAAAGTATACACATCTTGGGTTTATTTTTCACTGTCAGCAGTTTTCAAGGTAGGA
GAAACTCAACTACCCCCAAAAAGCATCTGTAAAGTCATTATCTCACTGAGTATTGTTTCA
TGCAAAAGAACAAAAACTACCCACCCCCCCTGATTGCCAGGAAATCCTGTTTCCCAATTT
CTATATTTGTGAATTTTATATGTAATCAACTATGTCAGATAAAGAGAACCTTTACATCTA
TGGATTGATTCAAAAACATAATGATTTAAAACAGAGGAATTTATTATGCACAGAAAAATG
TGTCTTGTATTAAATATTTTTATTAAAAGAATGTTTCACTAATGCATTGATAAGAAAACT
AGGTTAGCTGTGAGGGATGTTTCTGGTTTCACATCACATAACTAAACTTCTACTGCTACT
ACCAAGAGGACTGGCTCGGGCGTGGCAGAGTACCAGCGACTCTCGCCACAGCAGGAGATT
CAGGCAAGCAAACTGGCGTCTTACCCAAAGTGCTGACGCAGCCATAAGCCTGCAAAGATT
TTTTTTTTTTAAATCTTCATGGTTTTAGAGAACATGTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTAAAAGTATACACATCTTGGGTTTATTTTTCACTGTCAGCAGTTTTCAAGGTAGGA
GAAACTCAACTACCCCCAAAAAGCATCTGTAAAGTCATTATCTCACTGAGTATTGTTTCA
TGCAAAAGAACAAAAACTACCCACCCCCCCTGATTGCCAGGAAATCCTGTTTCCCAATTT
CTATATTTGTGAATTTTATATGTAATCAACTATGTCAGATAAAGAGAACCTTTACATCTA
TGGATTGATTCAAAAACATAATGATTTAAAACAGAGGAATTTATTATGCACAGAAAAATG
TGTCTTGTATTAAATATTTTTATTAAAAGAATGTTTCACTAATGCATTGATAAGAAAACT
AGGTTAGCTGTGAGGGATGTTTCTGGTTTCACATCACATAACTAAACTTCTACTGCTACT
ACCAAGAGGACTGGCTCGGGCGTGGCAGAGTACCAGCGACTCTCGCCACAGCAGGAGATT
CAGGCAAGCAAACTGGCGTCTTACCCAAAGTGCTGACGCAGCCATAAGCCTGCAAAGATT
TTTTTTTTTTAAATCTTCATGGTTTTAGAGAACATGTAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-585, gnl|bosTau2|chr5 (39251584-39251010)
               

               
               1-585, gnl|Hg17|chr12 (97641601-97641048)
               

               
               1-585, gnl|Mm7|chr10 (90529026-90529653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-585, gnl|bosTau2|chr5 (39251584-39251010)
               

               
               1-585, gnl|Hg17|chr12 (97641601-97641048)
               

               
               1-585, gnl|Mm7|chr10 (90529026-90529653)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.471624)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cbr (0.127975)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cbr (0.127975)
               

               
               spc (0.113366)

	1-585, gnl\|bosTau2\|chr5 (39251584-39251010)
	1-585, gnl\|Hg17\|chr12 (97641601-97641048)
	1-585, gnl\|Mm7\|chr10 (90529026-90529653)

	fco (0.471624)
	fbs (0.175346)
	fhi (0.169578)
	cbr (0.127975)
	spc (0.113366)