Ss1.1-rfhi4011b_n18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGACCTGGAGCGGGCGAAAAGGGCAACGATAGTTTCACTGGAAGACTTTGAACAAAGGC TAAATCAGGCCATTGAACGAAATGCATTTTTAGAAAGTGAACTTGATGAAAAGGAATCTT TGTTGGTCTCTGTACAGAGATTAAAGGATGAAGCAAGAGATTTAAGACAAGAACTAGCTG TTCGGGAAAGACAACAGGAAGTAACCAGAAAATCGGCTCCTAGTTCTCCAACTCTAGACT GTGAAAAGATGGATTCTGCTGTCCAAGCGTCACTTTCTTTGCCAGCTACTCCTGTTGGCA AAGGAACGGAGAACAGTTTTCCGTCACCAAAAGCTATACCAAACGGTTTTGGCACCAGTC CGCTGACTCCTTCAGCGAGGATATCGGCGCTGAACATCGTGGGGGATCTCTTACGGAAAG TGGGGGCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCAC GAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGATGAATAGCAACGGCACGAAGT TCTCTCGATCAGGGCACACGTCTTTCTTTGACAAAGGGGCAGTAAACGGCTTTGACCCAG CTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGCCCGTCGTCGGCACCGGGTATGCTGCCTC TCAGTGTGTGAGTGCCCGGCCTCCGGGTGGGGGCCCCTGCCCTCCTCCAGCAACCCAGGA CACCCACGCCTCGCCCCTCGGTGCCTGGGCCCAGCGCGCGCCCCGCCGTCTGCCTCCGCA CGGCCGGCGGAGGGCAGGCTGCATGCAGGGGCGGCTGCTGGGCCCCGCCAGCCCCAGGAC TCTGCGCGATCTCAATACTGGCTCTTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACAT GATTGCACTTTTGTGGGTCACAAGGTGATACATGCGTGTATTACTTGGTCACTGGATGCA GAAGTACCCATTCGTCACACCTGCCTCATAGCTCCCACCCTGCTCTACCGATAGGATTTA GTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTCTCCCCCAAATCAGGTCGACATGCG CCCTCCTCCTGAGCTCCCACGGAGCGTCTCCAGTGCTCACGATCACGTGCCCCCCACTCC CCCCACCCCCGTTGGGGCCTGTTGCTGGCAAAGAGTCAGGAAGGTCACTGAGTTAGGGAA CATTTTCTGCACCTTCTGCTTTTACGTTAGCAGTTATCATTCCATAGCTTGCCTCCCAGA GCAGCGAAACGCCTGTCTGAGCCCCAGATGGCAGGAGGTTCCGGGGCCTGGGCGCACGCA GGGCGGTGCCCCCGCCATCTCCTCCTCCTCCACGTGCCTCAGACTCCGGGTAGGGGTGGC GGCAGCCTCCTCGCCAGCCCTCTGGTCCTTTGGTTAAATGACATCTTCAGAGCATTTTTG TTTTGTCTTCTAAGGGCCCCTCCCGTTGTGTTAGGAAGGGTTGAGTGGCCTGATGCCGGG GGCTGGCCGGTGCCAGCTTCTGGGGGGGCAGACTGACCGGAAGTGGTTGTCCCTGTGCGT CCTTTGATTACTCTCATGCTGCATTTACTGTTTACATTTGTTTTCTTGTACATAGGTTTG TAAACATTATTGCCTAAGATATTTGTATATAACTTGGGCTTTGTAGCTTTTATTTATTCA GAACTCATATGGCATGTTAATGACTCACGATGGTGTCCGACTCTGGGCAGCTGTATAGGA TCATCATGTGGTGAAAAAGAAGTACTTCCCTCCAAAAAATCTTTTAATGTGGAAACAATA AATTTCACAGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGACCTGGAGCGGGCGAAAAGGGCAACGATAGTTTCACTGGAAGACTTTGAACAAAGGC TAAATCAGGCCATTGAACGAAATGCATTTTTAGAAAGTGAACTTGATGAAAAGGAATCTT TGTTGGTCTCTGTACAGAGATTAAAGGATGAAGCAAGAGATTTAAGACAAGAACTAGCTG TTCGGGAAAGACAACAGGAAGTAACCAGAAAATCGGCTCCTAGTTCTCCAACTCTAGACT GTGAAAAGATGGATTCTGCTGTCCAAGCGTCACTTTCTTTGCCAGCTACTCCTGTTGGCA AAGGAACGGAGAACAGTTTTCCGTCACCAAAAGCTATACCAAACGGTTTTGGCACCAGTC CGCTGACTCCTTCAGCGAGGATATCGGCGCTGAACATCGTGGGGGATCTCTTACGGAAAG TGGGGGCTTTAGAATCCAAATTAGCAGCTTGCAGGAATTTTGCAAAGGACCAAGCATCAC GAAAATCCTATATTTCAGGGAATGTTAACTGTGGGGTGATGAATAGCAACGGCACGAAGT TCTCTCGATCAGGGCACACGTCTTTCTTTGACAAAGGGGCAGTAAACGGCTTTGACCCAG CTCCTCCTCCTCCTGGTCTGGGCTCCTCGCGCCCGTCGTCGGCACCGGGTATGCTGCCTC TCAGTGTGTGAGTGCCCGGCCTCCGGGTGGGGGCCCCTGCCCTCCTCCAGCAACCCAGGA CACCCACGCCTCGCCCCTCGGTGCCTGGGCCCAGCGCGCGCCCCGCCGTCTGCCTCCGCA CGGCCGGCGGAGGGCAGGCTGCATGCAGGGGCGGCTGCTGGGCCCCGCCAGCCCCAGGAC TCTGCGCGATCTCAATACTGGCTCTTTTCTCTTCTCGCCGTAGTGCCGTTGGTTTCACAT GATTGCACTTTTGTGGGTCACAAGGTGATACATGCGTGTATTACTTGGTCACTGGATGCA GAAGTACCCATTCGTCACACCTGCCTCATAGCTCCCACCCTGCTCTACCGATAGGATTTA GTTGTGTTTAGGACATTGCAGATCTTCTAGAAGTTCTCCCCCAAATCAGGTCGACATGCG CCCTCCTCCTGAGCTCCCACGGAGCGTCTCCAGTGCTCACGATCACGTGCCCCCCACTCC CCCCACCCCCGTTGGGGCCTGTTGCTGGCAAAGAGTCAGGAAGGTCACTGAGTTAGGGAA CATTTTCTGCACCTTCTGCTTTTACGTTAGCAGTTATCATTCCATAGCTTGCCTCCCAGA GCAGCGAAACGCCTGTCTGAGCCCCAGATGGCAGGAGGTTCCGGGGCCTGGGCGCACGCA GGGCGGTGCCCCCGCCATCTCCTCCTCCTCCACGTGCCTCAGACTCCGGGTAGGGGTGGC GGCAGCCTCCTCGCCAGCCCTCTGGTCCTTTGGTTAAATGACATCTTCAGAGCATTTTTG TTTTGTCTTCTAAGGGCCCCTCCCGTTGTGTTAGGAAGGGTTGAGTGGCCTGATGCCGGG GGCTGGCCGGTGCCAGCTTCTGGGGGGGCAGACTGACCGGAAGTGGTTGTCCCTGTGCGT CCTTTGATTACTCTCATGCTGCATTTACTGTTTACATTTGTTTTCTTGTACATAGGTTTG TAAACATTATTGCCTAAGATATTTGTATATAACTTGGGCTTTGTAGCTTTTATTTATTCA GAACTCATATGGCATGTTAATGACTCACGATGGTGTCCGACTCTGGGCAGCTGTATAGGA TCATCATGTGGTGAAAAAGAAGTACTTCCCTCCAAAAAATCTTTTAATGTGGAAACAATA AATTTCACAGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1564-1683, - strand, RNAz p=0.988685 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1564-1683, - strand, RNAz p=0.988685 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 21-159, gnl|bosTau2|chr25 (16243509-16243647) | |
| 21-159, gnl|canFam2|chr6 (31193749-31193589) | |
| 21-159, gnl|danRer3|chr3 (32370713-32370866) | |
| 21-159, gnl|dasNov1|scaffold_36817 (47697-47557) | |
| 21-159, gnl|echTel1|scaffold_294344 (27442-27280) | |
| 21-159, gnl|fr1|chrUn (285979709-285979549) | |
| 21-159, gnl|galGal2|chr14 (9594762-9594915) | |
| 21-159, gnl|hg17|chr16 (15688719-15688881) | |
| 21-159, gnl|Hg17|chr16 (15688731-15688869) | |
| 21-159, gnl|loxAfr1|scaffold_1864 (51339-51186) | |
| 21-159, gnl|mm7|chr16 (13729970-13730131) | |
| 21-159, gnl|Mm7|chr16 (13729982-13730120) | |
| 21-159, gnl|monDom2|scaffold_17 (27575926-27575767) | |
| 21-159, gnl|oryCun1|scaffold_209389 (53352-53514) | |
| 21-159, gnl|panTro1|chr18 (16059116-16059278) | |
| 21-159, gnl|rheMac2|chr20 (15403811-15403973) | |
| 21-159, gnl|rn3|chr10 (795980-795819) | |
| 21-159, gnl|tetNig1|chr3 (14122465-14122324) | |
| 21-159, gnl|xenTro1|scaffold_290 (19077-18920) | |
| 577-1822, gnl|bosTau2|chr2 (77841977-77843209) | |
| 577-1822, gnl|Hg17|chr17 (8310972-8312203) | |
| 577-1822, gnl|Mm7|chr11 (68904240-68903008) | |
| 1533-1752, gnl|bosTau2|chr13 (699600-699381) | |
| 1533-1752, gnl|Mm7|chr11 (68903280-68903084) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-159, gnl|bosTau2|chr25 (16243509-16243647) | |
| 21-159, gnl|canFam2|chr6 (31193749-31193589) | |
| 21-159, gnl|danRer3|chr3 (32370713-32370866) | |
| 21-159, gnl|dasNov1|scaffold_36817 (47697-47557) | |
| 21-159, gnl|echTel1|scaffold_294344 (27442-27280) | |
| 21-159, gnl|fr1|chrUn (285979709-285979549) | |
| 21-159, gnl|galGal2|chr14 (9594762-9594915) | |
| 21-159, gnl|hg17|chr16 (15688719-15688881) | |
| 21-159, gnl|Hg17|chr16 (15688731-15688869) | |
| 21-159, gnl|loxAfr1|scaffold_1864 (51339-51186) | |
| 21-159, gnl|mm7|chr16 (13729970-13730131) | |
| 21-159, gnl|Mm7|chr16 (13729982-13730120) | |
| 21-159, gnl|monDom2|scaffold_17 (27575926-27575767) | |
| 21-159, gnl|oryCun1|scaffold_209389 (53352-53514) | |
| 21-159, gnl|panTro1|chr18 (16059116-16059278) | |
| 21-159, gnl|rheMac2|chr20 (15403811-15403973) | |
| 21-159, gnl|rn3|chr10 (795980-795819) | |
| 21-159, gnl|tetNig1|chr3 (14122465-14122324) | |
| 21-159, gnl|xenTro1|scaffold_290 (19077-18920) | |
| 577-1822, gnl|bosTau2|chr2 (77841977-77843209) | |
| 577-1822, gnl|Hg17|chr17 (8310972-8312203) | |
| 577-1822, gnl|Mm7|chr11 (68904240-68903008) | |
| 1533-1752, gnl|bosTau2|chr13 (699600-699381) | |
| 1533-1752, gnl|Mm7|chr11 (68903280-68903084) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| tes (0.207814) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) |