Non-Coding RNA Search

Ss1.1-rfhi4012b_m6.5

Sequence:


               
               CCTCCGATGCCCCCACACTTTGCCCTGAGCTGAGGTTCTGGGAGGGCCCCCTACCTGTCC
CCCACCCTGGGCCTGCGGCCACCTGACCAGTGTTCCTGCCCTCGGAACAGACCCCAGCCT
CTGCCCAGGCACATTTGGATTTTCCCACCCGGAGGCAGGGTGAGGGGCTAGGGGGCTGTG
CAGTGTTACATGTCAGGCTGTGCTGCCAGCCCTGTTTGTCTGTGTAATTATTTTTGTAAA
ACTTGTATTATCTGTGGTTGCCACCTCCTCGCCCCTGGCCTCGGGCCCAGTCTGTCTTCC
AGGCCTGCCTGCACCTCACTCGGCTGCTCTGGGGGTCTCCGTGTCCCCTCCTAGCACTGG
CTGGCGGAGGCCTGTGACCCAACAGCCTGCCCAAAGAACTAGTTTCTGGGGGGCGGGGGT
GCGGGTAGGGTGATGCTCGGCAGGAGGTTTAAGCCCAGAGCCCTGGGGAAGGGGACACCC
TACACGACAACCCCTTGCCCTCCCTCCACCAGGCTGGAGGCCCAGTCTTCCCAAACTGGG
CTGCCCTTGTTCACGTGCCAAATGGCCCCGGCCCGCGTGCCCCGCCCCCGTCTCTGGAGC
CACAGCTCCTTCCCCTGAGCCCTGCCGTGTCCGTTCAGCCATCCTCTGTGCCCCTCCGTG
CAGTGACAGCCCCGGAAGAGCCGCCTCTAATCCTCCGTAGCAATAACGGTGCGCTGCCCA
CCCCTGCCCATCCGTGCACCACTAGGATTTTAAAGTCCATAGATTTTAATGAAATTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCGATGCCCCCACACTTTGCCCTGAGCTGAGGTTCTGGGAGGGCCCCCTACCTGTCC
CCCACCCTGGGCCTGCGGCCACCTGACCAGTGTTCCTGCCCTCGGAACAGACCCCAGCCT
CTGCCCAGGCACATTTGGATTTTCCCACCCGGAGGCAGGGTGAGGGGCTAGGGGGCTGTG
CAGTGTTACATGTCAGGCTGTGCTGCCAGCCCTGTTTGTCTGTGTAATTATTTTTGTAAA
ACTTGTATTATCTGTGGTTGCCACCTCCTCGCCCCTGGCCTCGGGCCCAGTCTGTCTTCC
AGGCCTGCCTGCACCTCACTCGGCTGCTCTGGGGGTCTCCGTGTCCCCTCCTAGCACTGG
CTGGCGGAGGCCTGTGACCCAACAGCCTGCCCAAAGAACTAGTTTCTGGGGGGCGGGGGT
GCGGGTAGGGTGATGCTCGGCAGGAGGTTTAAGCCCAGAGCCCTGGGGAAGGGGACACCC
TACACGACAACCCCTTGCCCTCCCTCCACCAGGCTGGAGGCCCAGTCTTCCCAAACTGGG
CTGCCCTTGTTCACGTGCCAAATGGCCCCGGCCCGCGTGCCCCGCCCCCGTCTCTGGAGC
CACAGCTCCTTCCCCTGAGCCCTGCCGTGTCCGTTCAGCCATCCTCTGTGCCCCTCCGTG
CAGTGACAGCCCCGGAAGAGCCGCCTCTAATCCTCCGTAGCAATAACGGTGCGCTGCCCA
CCCCTGCCCATCCGTGCACCACTAGGATTTTAAAGTCCATAGATTTTAATGAAATTTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               313-418, - strand, RNAz p=0.689667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-418, - strand, RNAz p=0.689667

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               318-420, - strand, RNAmicro p=0.999315

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               318-420, - strand, RNAmicro p=0.999315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr13 (23906618-23905870)
               

               
               1-780, gnl|Hg17|chr1 (44132010-44131261)
               

               
               1-780, gnl|Mm7|chr4 (117244953-117245731)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr13 (23906618-23905870)
               

               
               1-780, gnl|Hg17|chr1 (44132010-44131261)
               

               
               1-780, gnl|Mm7|chr4 (117244953-117245731)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	1-780, gnl\|bosTau2\|chr13 (23906618-23905870)
	1-780, gnl\|Hg17\|chr1 (44132010-44131261)
	1-780, gnl\|Mm7\|chr4 (117244953-117245731)

	fhi (0.339155)
	ece (0.229305)
	eye (0.170503)
	cly (0.120642)
	nbm (0.0993246)