Non-Coding RNA Search

Ss1.1-rfhi4014b_i19.5

Sequence:


               
               CTTGGCTGCTGCCCGCCCCTAGCCTTGACGCCTGCCCTGCTGCCTCCCAGGGGCCTCCCG
GGCCCCTTCCTGTGCCCCACAGCTTTACCAGAGTGAATCGTGTGTGCTGTACAGGCTCAG
TTGTCATTGCAGAAACCTCCAGACGGAGTAAAAGCCAATAAAAGTCTATGAATCAACCCA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGCTGCTGCCCGCCCCTAGCCTTGACGCCTGCCCTGCTGCCTCCCAGGGGCCTCCCG
GGCCCCTTCCTGTGCCCCACAGCTTTACCAGAGTGAATCGTGTGTGCTGTACAGGCTCAG
TTGTCATTGCAGAAACCTCCAGACGGAGTAAAAGCCAATAAAAGTCTATGAATCAACCCA
AAAAAAAAAAAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-179, gnl|bosTau2|chr19 (34428399-34428224)
               

               
               1-179, gnl|canFam2|chr9 (25714839-25714020)
               

               
               1-179, gnl|echTel1|scaffold_310535 (68162-69001)
               

               
               1-179, gnl|hg17|chr17 (35604600-35605429)
               

               
               1-179, gnl|Hg17|chr17 (35605266-35605431)
               

               
               1-179, gnl|mm7|chr11 (98961240-98962045)
               

               
               1-179, gnl|Mm7|chr11 (98961876-98962046)
               

               
               1-179, gnl|monDom2|scaffold_18 (49393046-49394020)
               

               
               1-179, gnl|panTro1|chr19 (38844271-38845101)
               

               
               1-179, gnl|rheMac2|chr16 (50306879-50307708)
               

               
               1-179, gnl|rn3|chr10 (87635761-87636553)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr19 (34428399-34428224)
               

               
               1-179, gnl|canFam2|chr9 (25714839-25714020)
               

               
               1-179, gnl|echTel1|scaffold_310535 (68162-69001)
               

               
               1-179, gnl|hg17|chr17 (35604600-35605429)
               

               
               1-179, gnl|Hg17|chr17 (35605266-35605431)
               

               
               1-179, gnl|mm7|chr11 (98961240-98962045)
               

               
               1-179, gnl|Mm7|chr11 (98961876-98962046)
               

               
               1-179, gnl|monDom2|scaffold_18 (49393046-49394020)
               

               
               1-179, gnl|panTro1|chr19 (38844271-38845101)
               

               
               1-179, gnl|rheMac2|chr16 (50306879-50307708)
               

               
               1-179, gnl|rn3|chr10 (87635761-87636553)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               nco (0.161734)

	1-179, gnl\|bosTau2\|chr19 (34428399-34428224)
	1-179, gnl\|canFam2\|chr9 (25714839-25714020)
	1-179, gnl\|echTel1\|scaffold_310535 (68162-69001)
	1-179, gnl\|hg17\|chr17 (35604600-35605429)
	1-179, gnl\|Hg17\|chr17 (35605266-35605431)
	1-179, gnl\|mm7\|chr11 (98961240-98962045)
	1-179, gnl\|Mm7\|chr11 (98961876-98962046)
	1-179, gnl\|monDom2\|scaffold_18 (49393046-49394020)
	1-179, gnl\|panTro1\|chr19 (38844271-38845101)
	1-179, gnl\|rheMac2\|chr16 (50306879-50307708)
	1-179, gnl\|rn3\|chr10 (87635761-87636553)