Non-Coding RNA Search

Ss1.1-rfhi4015b_b18.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGAGAGTTGCAACGTTTATTTCAGG
TTCTCTCTTGTTTTTTTTTTTTTTTGTATTTTTTTTTTTTTTTTCTTTTTTGCCACACAG
GCAGTATGTGGGAATTCCTGGGCCAGGGATTGAACCTACGCCGCACAGCAGCAACCAGAG
CCACAGCGGTGAGAACGCAGGAGC------------------------CGGCACGAGGAT
TGCACAGGATGTATAGGTATTATCATTCTTGCTGACATATTCTGGAAGCTTTCAGCCCCA
CCAACACTGCCCCGCCCAGGACTTCTGCAGCTGAAAGTTCCTGTGTCAGTAGGGTCTGAT
ATTTGTACATAGGTTATACATATATGTGTACATACGTGCCTCAATGAACATTGCCTGTCC
ACCTGATCATAGGTGTACATAGACTTCATAGAGCTCTGCAGTCTTTTGTAAATATCAACA
CAAGGAAATAAGTATATAAATATATATTACTGAGGATTTATTTTAACATCATTCTGTGTG
AAATGAAAAAATAAATAAAATTTTTGACAGACAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGAGAGTTGCAACGTTTATTTCAGG
TTCTCTCTTGTTTTTTTTTTTTTTTGTATTTTTTTTTTTTTTTTCTTTTTTGCCACACAG
GCAGTATGTGGGAATTCCTGGGCCAGGGATTGAACCTACGCCGCACAGCAGCAACCAGAG
CCACAGCGGTGAGAACGCAGGAGC------------------------CGGCACGAGGAT
TGCACAGGATGTATAGGTATTATCATTCTTGCTGACATATTCTGGAAGCTTTCAGCCCCA
CCAACACTGCCCCGCCCAGGACTTCTGCAGCTGAAAGTTCCTGTGTCAGTAGGGTCTGAT
ATTTGTACATAGGTTATACATATATGTGTACATACGTGCCTCAATGAACATTGCCTGTCC
ACCTGATCATAGGTGTACATAGACTTCATAGAGCTCTGCAGTCTTTTGTAAATATCAACA
CAAGGAAATAAGTATATAAATATATATTACTGAGGATTTATTTTAACATCATTCTGTGTG
AAATGAAAAAATAAATAAAATTTTTGACAGACAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-374, - strand, RNAz p=0.986365

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-374, - strand, RNAz p=0.986365

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               248-369, + strand, RNAmicro p=0.99971

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               248-369, + strand, RNAmicro p=0.99971

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               258-374, DB347220 TKIDN2 Homo sapiens cDNA clone TKIDN2002288 3', mRNA 
(dbj|DB347220.1|), blast E-value=0, identity=98.29% 
               

               
               258-374, BX415995 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP008YJ20 
(emb|BX415995.2|), blast E-value=0, identity=98.29% 
               

               
               258-374, AGENCOURT_8443348 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ876408.1|), blast E-value=0, identity=98.29% 
               

               
               258-374, UI-E-CK0-aar-h-08-0-UI.s1 UI-E-CK0 Homo sapiens cDNA clone 
(gb|BU726215.1|), blast E-value=0, identity=98.29% 
               

               
               255-374, BovGen_18767 normal cattle brain Bos taurus cDNA clone 
(gb|CO890442.1|), blast E-value=0, identity=98.33% 
               

               
               255-374, 1240483 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286372.1|), 
blast E-value=0, identity=98.33%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               258-374, DB347220 TKIDN2 Homo sapiens cDNA clone TKIDN2002288 3', mRNA 
(dbj|DB347220.1|), blast E-value=0, identity=98.29% 
               

               
               258-374, BX415995 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP008YJ20 
(emb|BX415995.2|), blast E-value=0, identity=98.29% 
               

               
               258-374, AGENCOURT_8443348 Lupski_sympathetic_trunk Homo sapiens cDNA clone 
(gb|BQ876408.1|), blast E-value=0, identity=98.29% 
               

               
               258-374, UI-E-CK0-aar-h-08-0-UI.s1 UI-E-CK0 Homo sapiens cDNA clone 
(gb|BU726215.1|), blast E-value=0, identity=98.29% 
               

               
               255-374, BovGen_18767 normal cattle brain Bos taurus cDNA clone 
(gb|CO890442.1|), blast E-value=0, identity=98.33% 
               

               
               255-374, 1240483 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286372.1|), 
blast E-value=0, identity=98.33%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               215-548, gnl|bosTau2|chr3 (29965624-29965290)
               

               
               215-548, gnl|Hg17|chr1 (110848575-110848245)
               

               
               215-548, gnl|Mm7|chr3 (106932962-106933292)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-548, gnl|bosTau2|chr3 (29965624-29965290)
               

               
               215-548, gnl|Hg17|chr1 (110848575-110848245)
               

               
               215-548, gnl|Mm7|chr3 (106932962-106933292)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ebs (0.118301)

	258-374, DB347220 TKIDN2 Homo sapiens cDNA clone TKIDN2002288 3', mRNA (dbj\|DB347220.1\|), blast E-value=0, identity=98.29%
	258-374, BX415995 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP008YJ20 (emb\|BX415995.2\|), blast E-value=0, identity=98.29%
	258-374, AGENCOURT_8443348 Lupski_sympathetic_trunk Homo sapiens cDNA clone (gb\|BQ876408.1\|), blast E-value=0, identity=98.29%
	258-374, UI-E-CK0-aar-h-08-0-UI.s1 UI-E-CK0 Homo sapiens cDNA clone (gb\|BU726215.1\|), blast E-value=0, identity=98.29%
	255-374, BovGen_18767 normal cattle brain Bos taurus cDNA clone (gb\|CO890442.1\|), blast E-value=0, identity=98.33%
	255-374, 1240483 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN286372.1\|), blast E-value=0, identity=98.33%

	215-548, gnl\|bosTau2\|chr3 (29965624-29965290)
	215-548, gnl\|Hg17\|chr1 (110848575-110848245)
	215-548, gnl\|Mm7\|chr3 (106932962-106933292)