Ss1.1-rfhi4015b_m17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGGGCGCCGCCGCGGAGCCAGCAGAGCAGAGCCGGGAGCGCGTCCGCGTCCACGCAG CCGCCGGCCGCCGAGCACCCAGGGCCCCCCGCACGCCAGGACGTTGGAGGTGGCCGCGAG ACATGCCACCGGCCCGGAAGCTCCTCGGCCTCCTCTTCCTCATCCTGATGGGCACTGAAC TCACTCAGGTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGG ACAGCGAGGGCAGGTGTATCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGCTCACGGG ATGCCCGCACGAAACAGCTGAGGCAGCTGCTGGAGAAGGTGCAAAACATGTCCCAATCCA TAGAGGTCCTGGACAGGCGGACCCAGAGAGACTTGCAGTACGTGGAGAAGATGGAGAACC AGATGAAAGGCCTGGAGTCCAAGTTCAAACAGGTGGAGGAGAGTCATAAGCAACACCTGG CCAGGCAGTTCAAGGGCTAACTTAAAAGAGAGTTTTTTCAATGCTGCAGTGACTGAAGAG GCAGCTCACTCCCATGTAAGCCTGACAGAGGCCAGAGAGCTATTTTGCACCTTGCATTTT TACTCTGATTTCCCAACACTTAGCACCATAGCCCCAAGGAACCTTGACCACACCCAGGAC CTCTTTTGCATGCGACTGTAGATGCATTTCATGAATAAGTTGAACCCTTGTCAATGCATT TTTTGAAACAGAAAAACAAAGCAAACAAAAAAGAAACTTTGTGTCTGTGACTTAACGCAT GTAACCGTAAGATGTTGCCTTCTAAACTGACAATAAAGACCTTTCCCAAATAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGGGCGCCGCCGCGGAGCCAGCAGAGCAGAGCCGGGAGCGCGTCCGCGTCCACGCAG CCGCCGGCCGCCGAGCACCCAGGGCCCCCCGCACGCCAGGACGTTGGAGGTGGCCGCGAG ACATGCCACCGGCCCGGAAGCTCCTCGGCCTCCTCTTCCTCATCCTGATGGGCACTGAAC TCACTCAGGTGCTGCCCACCAACCCTGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGG ACAGCGAGGGCAGGTGTATCTGCACGGTGGTCGCCCCCCAGCAGACCATGTGCTCACGGG ATGCCCGCACGAAACAGCTGAGGCAGCTGCTGGAGAAGGTGCAAAACATGTCCCAATCCA TAGAGGTCCTGGACAGGCGGACCCAGAGAGACTTGCAGTACGTGGAGAAGATGGAGAACC AGATGAAAGGCCTGGAGTCCAAGTTCAAACAGGTGGAGGAGAGTCATAAGCAACACCTGG CCAGGCAGTTCAAGGGCTAACTTAAAAGAGAGTTTTTTCAATGCTGCAGTGACTGAAGAG GCAGCTCACTCCCATGTAAGCCTGACAGAGGCCAGAGAGCTATTTTGCACCTTGCATTTT TACTCTGATTTCCCAACACTTAGCACCATAGCCCCAAGGAACCTTGACCACACCCAGGAC CTCTTTTGCATGCGACTGTAGATGCATTTCATGAATAAGTTGAACCCTTGTCAATGCATT TTTTGAAACAGAAAAACAAAGCAAACAAAAAAGAAACTTTGTGTCTGTGACTTAACGCAT GTAACCGTAAGATGTTGCCTTCTAAACTGACAATAAAGACCTTTCCCAAATAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
| 186-341, gnl|bosTau2|chr11 (86520852-86520697) | |
| 186-341, gnl|Hg17|chr9 (135207983-135208138) | |
| 186-341, gnl|Mm7|chr2 (28215386-28215541) | |
| 493-832, gnl|bosTau2|chr11 (86514221-86513886) | |
| 493-832, gnl|canFam2|chr9 (54322766-54323174) | |
| 493-832, gnl|danRer3|chr5 (70704768-70704377) | |
| 493-832, gnl|dasNov1|scaffold_23720 (21221-20819) | |
| 493-832, gnl|fr1|chrUn (30905365-30904856) | |
| 493-832, gnl|galGal2|chr17 (2808341-2807894) | |
| 493-832, gnl|hg17|chr9 (135215493-135215898) | |
| 493-832, gnl|Hg17|chr9 (135215570-135215897) | |
| 493-832, gnl|loxAfr1|scaffold_9919 (58071-58474) | |
| 493-832, gnl|mm7|chr2 (28221337-28221742) | |
| 493-832, gnl|Mm7|chr2 (28221410-28221741) | |
| 493-832, gnl|monDom2|scaffold_51 (12695524-12695928) | |
| 493-832, gnl|panTro1|chr11 (120106034-120106439) | |
| 493-832, gnl|rheMac2|chr15 (3195944-3195536) | |
| 493-832, gnl|rn3|chr3 (7179186-7179595) | |
| 493-832, gnl|tetNig1|chrUn_random (88256432-88255952) | |
| 493-832, gnl|xenTro1|scaffold_95 (1188820-1188373) |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 186-341, gnl|bosTau2|chr11 (86520852-86520697) | |
| 186-341, gnl|Hg17|chr9 (135207983-135208138) | |
| 186-341, gnl|Mm7|chr2 (28215386-28215541) | |
| 493-832, gnl|bosTau2|chr11 (86514221-86513886) | |
| 493-832, gnl|canFam2|chr9 (54322766-54323174) | |
| 493-832, gnl|danRer3|chr5 (70704768-70704377) | |
| 493-832, gnl|dasNov1|scaffold_23720 (21221-20819) | |
| 493-832, gnl|fr1|chrUn (30905365-30904856) | |
| 493-832, gnl|galGal2|chr17 (2808341-2807894) | |
| 493-832, gnl|hg17|chr9 (135215493-135215898) | |
| 493-832, gnl|Hg17|chr9 (135215570-135215897) | |
| 493-832, gnl|loxAfr1|scaffold_9919 (58071-58474) | |
| 493-832, gnl|mm7|chr2 (28221337-28221742) | |
| 493-832, gnl|Mm7|chr2 (28221410-28221741) | |
| 493-832, gnl|monDom2|scaffold_51 (12695524-12695928) | |
| 493-832, gnl|panTro1|chr11 (120106034-120106439) | |
| 493-832, gnl|rheMac2|chr15 (3195944-3195536) | |
| 493-832, gnl|rn3|chr3 (7179186-7179595) | |
| 493-832, gnl|tetNig1|chrUn_random (88256432-88255952) | |
| 493-832, gnl|xenTro1|scaffold_95 (1188820-1188373) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| fbs (0.350693) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| eye (0.170503) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| fbs (0.350693) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| eye (0.170503) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| ldo (0.0970026) |