Non-Coding RNA Search

Ss1.1-rfhi4016b_h5.5

Sequence:


               
               GCTCGAGTGAGGTTTGTGTCAGGCCCCAGATTTATACATTAACGTTTCTGCAGAACAGGA
ATGATCACAGTCACTGGGTTAATAAGCTACATTAATAGCTTAATATCAAGTCAAGTCATG
TTTTGCCATCAAGCTTAAACTTTGAGGTTTTCAGGTTTGTATATGAAGAACTGGACTTGT
ATACGCTGGCATATTCTAGTGTGAGGATGAATCTACCTACGAAATTTTTTACTAAATTGC
TTAAACTTTCTGGGTTGTCTTTACCATTTGCCCATAGATTAATTACAATTTGGAAACCTT
AGTTAATCCATGTTGCCTATTCAATTTGATATAAAATGACATGAAAGTCTTGATGTGGCA
GTTAAGGAAACCAACATGTTTTGCCTCAGTTGACCCTATAAATAAAATAATTTTCTATGT
GTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGAGTGAGGTTTGTGTCAGGCCCCAGATTTATACATTAACGTTTCTGCAGAACAGGA
ATGATCACAGTCACTGGGTTAATAAGCTACATTAATAGCTTAATATCAAGTCAAGTCATG
TTTTGCCATCAAGCTTAAACTTTGAGGTTTTCAGGTTTGTATATGAAGAACTGGACTTGT
ATACGCTGGCATATTCTAGTGTGAGGATGAATCTACCTACGAAATTTTTTACTAAATTGC
TTAAACTTTCTGGGTTGTCTTTACCATTTGCCCATAGATTAATTACAATTTGGAAACCTT
AGTTAATCCATGTTGCCTATTCAATTTGATATAAAATGACATGAAAGTCTTGATGTGGCA
GTTAAGGAAACCAACATGTTTTGCCTCAGTTGACCCTATAAATAAAATAATTTTCTATGT
GTAAAAAAAAAA

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               2-422, gnl|bosTau2|chr10 (59628707-59629169)
               

               
               2-422, gnl|canFam2|chr8 (49522053-49522433)
               

               
               2-422, gnl|dasNov1|scaffold_10537 (33278-32914)
               

               
               2-422, gnl|hg17|chr14 (72658311-72658721)
               

               
               2-422, gnl|Hg17|chr14 (72658322-72659100)
               

               
               2-422, gnl|monDom2|scaffold_8 (62132242-62131872)
               

               
               2-422, gnl|panTro1|chr15 (72438849-72439259)
               

               
               2-422, gnl|rheMac2|chr7 (136239396-136239806)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-422, gnl|bosTau2|chr10 (59628707-59629169)
               

               
               2-422, gnl|canFam2|chr8 (49522053-49522433)
               

               
               2-422, gnl|dasNov1|scaffold_10537 (33278-32914)
               

               
               2-422, gnl|hg17|chr14 (72658311-72658721)
               

               
               2-422, gnl|Hg17|chr14 (72658322-72659100)
               

               
               2-422, gnl|monDom2|scaffold_8 (62132242-62131872)
               

               
               2-422, gnl|panTro1|chr15 (72438849-72439259)
               

               
               2-422, gnl|rheMac2|chr7 (136239396-136239806)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	2-422, gnl\|bosTau2\|chr10 (59628707-59629169)
	2-422, gnl\|canFam2\|chr8 (49522053-49522433)
	2-422, gnl\|dasNov1\|scaffold_10537 (33278-32914)
	2-422, gnl\|hg17\|chr14 (72658311-72658721)
	2-422, gnl\|Hg17\|chr14 (72658322-72659100)
	2-422, gnl\|monDom2\|scaffold_8 (62132242-62131872)
	2-422, gnl\|panTro1\|chr15 (72438849-72439259)
	2-422, gnl\|rheMac2\|chr7 (136239396-136239806)