Ss1.1-rfhi4016b_i21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACATTTCGAGTCCCAGCAAGACTTAGAAAATAAATGGTCCAATGAACTAAAACAATCC ACTGCCATTCAAAAGCAAGAGTATCAGGAATGGGTGATAAAACTTCATCAGGACCTAAAA AACCCCAATAACAGCTCCCTCAGTGAGGAAATTAAAGTTCAACCAAGTCAGTTCAGAGAA TCTGCTGAAGCAAATGGAAGGATTTATGAGGAACAGAGAAAGTTGGAAGAAAGTTTTACC ATTCACTTAGGAGCCCAGTTGAAGACCATGCATAATCTGAGGCTGCTGAGAGCAGATATG CTGGATTTCTGTAAGCACAGGAGGAACCACCGAAGTGGCGTGAAGCTCCACCGACTCCAG ACAGCACTGTCACTCTATTCCACGTCCCTCTGCGGCCTGGTGTTGCTGGTTGATAATCGA ATCAATTCATATAGTGGTATTAAAAGAGATTTTGCCACAGTTTGCCAAGAATGCACTGAC TTTCATTTTCCCCGAATTGAAGAGCAGCTGGAGGTTGTCCAGCAGGTGGTCCTTTATGCC AGAACTCAGCGCAGGAGCAAGTTGAAAGAATCACACGAGTCTGGAAACCGAAATGGAGGA AGTGACGATAAGTCGAAGAATGCAGAGAGAAACTACTTAAATATTTTACCTGGAGAATTT TACATCACTCGGCATTCGAACCTCTCAGAAATACATGTTGCTTTCCATCTTTGTGTGGAT GACAATGTGAAATCAGGGAACATCACTGCTCGCGACCCTGCCATCATGGGACTCCGAAAC ATACTCAAGGTTTGCTGTACCCATGACATCACAACCATAAGTATTCCTCTCCTGCTGGTG CATGACATGTCAGAGGAAATGACTATACCGTGGTGCTTAAGGAGAGCAGAACTTGTGTTT AAGTGTGTCAAAGGTTTCATGATGGAAATGGCCTCATGGGATGGAGGAATTTCTAGGACA GTGCAATTTCTGGTACCACAGAGCATTTCTGAAGAAATGTTTTATCAACTTAGTAACATG CTTCCCCAGATCTTCCGCGTATCGTCAACACTGACCCTGACCTCTAAGCACTAGACCCTC GTAGACCAACCTGCTGGCAGAAGAGGATTGTTTAATACTCCAGGAATCTGAGCCATGCTG GGATTCTGTCAAGCAAAAGATGCCCAGAAGGAGGACCTGCAATCCAATCCACAAATCCAA TCATGACAAATGTCTGTTAAACAGTCCAAAAATCCATGCTAATCAGCCCTTACTTTATAC ATTTAGTCTTAAAGCTTCTTTATGGGGGAAAAAAGTCTTTTTTTCCTACGGTTGTGTCCT ATCTGTGAATATTAGTGAGTTAAAACTAGGTGTATATCACACATGGACACTAGATGTAGA TCTTTCACTACATTTTCATGGAGATATTTGACTTGCCCAAAAGGTTTGGATCACATCCGG GACAAGGCTTAATTAACATACAAATAAAATCTTCCCTCTACCTTATTTGCCAAGCGAAAA TTAAAAGACAATGAAATATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACATTTCGAGTCCCAGCAAGACTTAGAAAATAAATGGTCCAATGAACTAAAACAATCC ACTGCCATTCAAAAGCAAGAGTATCAGGAATGGGTGATAAAACTTCATCAGGACCTAAAA AACCCCAATAACAGCTCCCTCAGTGAGGAAATTAAAGTTCAACCAAGTCAGTTCAGAGAA TCTGCTGAAGCAAATGGAAGGATTTATGAGGAACAGAGAAAGTTGGAAGAAAGTTTTACC ATTCACTTAGGAGCCCAGTTGAAGACCATGCATAATCTGAGGCTGCTGAGAGCAGATATG CTGGATTTCTGTAAGCACAGGAGGAACCACCGAAGTGGCGTGAAGCTCCACCGACTCCAG ACAGCACTGTCACTCTATTCCACGTCCCTCTGCGGCCTGGTGTTGCTGGTTGATAATCGA ATCAATTCATATAGTGGTATTAAAAGAGATTTTGCCACAGTTTGCCAAGAATGCACTGAC TTTCATTTTCCCCGAATTGAAGAGCAGCTGGAGGTTGTCCAGCAGGTGGTCCTTTATGCC AGAACTCAGCGCAGGAGCAAGTTGAAAGAATCACACGAGTCTGGAAACCGAAATGGAGGA AGTGACGATAAGTCGAAGAATGCAGAGAGAAACTACTTAAATATTTTACCTGGAGAATTT TACATCACTCGGCATTCGAACCTCTCAGAAATACATGTTGCTTTCCATCTTTGTGTGGAT GACAATGTGAAATCAGGGAACATCACTGCTCGCGACCCTGCCATCATGGGACTCCGAAAC ATACTCAAGGTTTGCTGTACCCATGACATCACAACCATAAGTATTCCTCTCCTGCTGGTG CATGACATGTCAGAGGAAATGACTATACCGTGGTGCTTAAGGAGAGCAGAACTTGTGTTT AAGTGTGTCAAAGGTTTCATGATGGAAATGGCCTCATGGGATGGAGGAATTTCTAGGACA GTGCAATTTCTGGTACCACAGAGCATTTCTGAAGAAATGTTTTATCAACTTAGTAACATG CTTCCCCAGATCTTCCGCGTATCGTCAACACTGACCCTGACCTCTAAGCACTAGACCCTC GTAGACCAACCTGCTGGCAGAAGAGGATTGTTTAATACTCCAGGAATCTGAGCCATGCTG GGATTCTGTCAAGCAAAAGATGCCCAGAAGGAGGACCTGCAATCCAATCCACAAATCCAA TCATGACAAATGTCTGTTAAACAGTCCAAAAATCCATGCTAATCAGCCCTTACTTTATAC ATTTAGTCTTAAAGCTTCTTTATGGGGGAAAAAAGTCTTTTTTTCCTACGGTTGTGTCCT ATCTGTGAATATTAGTGAGTTAAAACTAGGTGTATATCACACATGGACACTAGATGTAGA TCTTTCACTACATTTTCATGGAGATATTTGACTTGCCCAAAAGGTTTGGATCACATCCGG GACAAGGCTTAATTAACATACAAATAAAATCTTCCCTCTACCTTATTTGCCAAGCGAAAA TTAAAAGACAATGAAATATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 22-143, gnl|bosTau2|chr5 (63613117-63612996) | |
| 22-143, gnl|Hg17|chr12 (4504802-4504681) | |
| 22-143, gnl|Mm7|chr6 (126975798-126975919) | |
| 242-448, gnl|bosTau2|chr5 (62735190-62735396) | |
| 242-448, gnl|canFam2|chr27 (43398104-43397877) | |
| 242-448, gnl|danRer3|chrUn (177908769-177908989) | |
| 242-448, gnl|dasNov1|scaffold_61621 (874-647) | |
| 242-448, gnl|echTel1|scaffold_305748 (30778-31006) | |
| 242-448, gnl|fr1|chrUn (216329362-216329140) | |
| 242-448, gnl|galGal2|chr1 (185951571-185951777) | |
| 242-448, gnl|hg17|chr12 (4497458-4497686) | |
| 242-448, gnl|Hg17|chr12 (4497691-4497485) | |
| 242-448, gnl|loxAfr1|scaffold_6059 (16641-16413) | |
| 242-448, gnl|mm7|chr6 (126980812-126980584) | |
| 242-448, gnl|Mm7|chr6 (126980577-126980783) | |
| 242-448, gnl|monDom2|scaffold_31 (21130982-21130759) | |
| 242-448, gnl|oryCun1|scaffold_203477 (318593-318821) | |
| 242-448, gnl|panTro1|chr10 (4753780-4754008) | |
| 242-448, gnl|rheMac2|chr11 (4612269-4612497) | |
| 242-448, gnl|rn3|chr4 (163582688-163582475) | |
| 242-448, gnl|tetNig1|chr13 (1034878-1034676) | |
| 242-448, gnl|xenTro1|scaffold_683 (30692-30476) | |
| 652-859, gnl|bosTau2|chr5 (62744631-62744838) | |
| 652-859, gnl|canFam2|chr27 (43407133-43406893) | |
| 652-859, gnl|danRer3|chrUn (177905711-177905948) | |
| 652-859, gnl|dasNov1|scaffold_653 (107523-107310) | |
| 652-859, gnl|echTel1|scaffold_305748 (18214-18454) | |
| 652-859, gnl|fr1|chrUn (216330405-216330181) | |
| 652-859, gnl|galGal2|chr1 (185945060-185945292) | |
| 652-859, gnl|hg17|chr12 (4479550-4479790) | |
| 652-859, gnl|Hg17|chr12 (4479768-4479561) | |
| 652-859, gnl|loxAfr1|scaffold_6059 (27710-27470) | |
| 652-859, gnl|mm7|chr6 (126992279-126992041) | |
| 652-859, gnl|Mm7|chr6 (126992061-126992268) | |
| 652-859, gnl|monDom2|scaffold_31 (21145818-21145581) | |
| 652-859, gnl|oryCun1|scaffold_176176 (9579-9819) | |
| 652-859, gnl|panTro1|chr10 (4735165-4735405) | |
| 652-859, gnl|rheMac2|chr11 (4600499-4600739) | |
| 652-859, gnl|rn3|chr4 (163591814-163591576) | |
| 652-859, gnl|tetNig1|chr13 (1035917-1035694) | |
| 652-859, gnl|xenTro1|scaffold_683 (39065-38828) | |
| 978-1104, gnl|bosTau2|chr5 (62749476-62749601) | |
| 978-1104, gnl|Hg17|chr12 (4469330-4469173) | |
| 978-1104, gnl|Mm7|chr6 (127000289-127000412) | |
| 1135-1456, gnl|bosTau2|chr5 (62749601-62749955) | |
| 1135-1456, gnl|Hg17|chr12 (4469173-4468856) | |
| 1135-1456, gnl|Mm7|chr6 (127000412-127000737) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-143, gnl|bosTau2|chr5 (63613117-63612996) | |
| 22-143, gnl|Hg17|chr12 (4504802-4504681) | |
| 22-143, gnl|Mm7|chr6 (126975798-126975919) | |
| 242-448, gnl|bosTau2|chr5 (62735190-62735396) | |
| 242-448, gnl|canFam2|chr27 (43398104-43397877) | |
| 242-448, gnl|danRer3|chrUn (177908769-177908989) | |
| 242-448, gnl|dasNov1|scaffold_61621 (874-647) | |
| 242-448, gnl|echTel1|scaffold_305748 (30778-31006) | |
| 242-448, gnl|fr1|chrUn (216329362-216329140) | |
| 242-448, gnl|galGal2|chr1 (185951571-185951777) | |
| 242-448, gnl|hg17|chr12 (4497458-4497686) | |
| 242-448, gnl|Hg17|chr12 (4497691-4497485) | |
| 242-448, gnl|loxAfr1|scaffold_6059 (16641-16413) | |
| 242-448, gnl|mm7|chr6 (126980812-126980584) | |
| 242-448, gnl|Mm7|chr6 (126980577-126980783) | |
| 242-448, gnl|monDom2|scaffold_31 (21130982-21130759) | |
| 242-448, gnl|oryCun1|scaffold_203477 (318593-318821) | |
| 242-448, gnl|panTro1|chr10 (4753780-4754008) | |
| 242-448, gnl|rheMac2|chr11 (4612269-4612497) | |
| 242-448, gnl|rn3|chr4 (163582688-163582475) | |
| 242-448, gnl|tetNig1|chr13 (1034878-1034676) | |
| 242-448, gnl|xenTro1|scaffold_683 (30692-30476) | |
| 652-859, gnl|bosTau2|chr5 (62744631-62744838) | |
| 652-859, gnl|canFam2|chr27 (43407133-43406893) | |
| 652-859, gnl|danRer3|chrUn (177905711-177905948) | |
| 652-859, gnl|dasNov1|scaffold_653 (107523-107310) | |
| 652-859, gnl|echTel1|scaffold_305748 (18214-18454) | |
| 652-859, gnl|fr1|chrUn (216330405-216330181) | |
| 652-859, gnl|galGal2|chr1 (185945060-185945292) | |
| 652-859, gnl|hg17|chr12 (4479550-4479790) | |
| 652-859, gnl|Hg17|chr12 (4479768-4479561) | |
| 652-859, gnl|loxAfr1|scaffold_6059 (27710-27470) | |
| 652-859, gnl|mm7|chr6 (126992279-126992041) | |
| 652-859, gnl|Mm7|chr6 (126992061-126992268) | |
| 652-859, gnl|monDom2|scaffold_31 (21145818-21145581) | |
| 652-859, gnl|oryCun1|scaffold_176176 (9579-9819) | |
| 652-859, gnl|panTro1|chr10 (4735165-4735405) | |
| 652-859, gnl|rheMac2|chr11 (4600499-4600739) | |
| 652-859, gnl|rn3|chr4 (163591814-163591576) | |
| 652-859, gnl|tetNig1|chr13 (1035917-1035694) | |
| 652-859, gnl|xenTro1|scaffold_683 (39065-38828) | |
| 978-1104, gnl|bosTau2|chr5 (62749476-62749601) | |
| 978-1104, gnl|Hg17|chr12 (4469330-4469173) | |
| 978-1104, gnl|Mm7|chr6 (127000289-127000412) | |
| 1135-1456, gnl|bosTau2|chr5 (62749601-62749955) | |
| 1135-1456, gnl|Hg17|chr12 (4469173-4468856) | |
| 1135-1456, gnl|Mm7|chr6 (127000412-127000737) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fhi (0.169578) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| kid (0.129735) | |
| sug (0.127291) | |
| med (0.116252) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| kid (0.129735) | |
| sug (0.127291) | |
| med (0.116252) |