Ss1.1-rfhi4017b_i22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTAATTGAGGGAGTGAAGAAGGCAGCAGCTCGCTTCTAACTGGACTGCAGATCTGGGAC AGTGTCCTGAGCTGGCAGCAGACCTACCCGACTTTCACTAGAACTCAGCTTTCACATTCC AGAAAACATGACCCTCGCTGCCTACAAAGAGAAGATGAAGGAGCTCCCCCTGGTGTCCCT GTTCTGCTCCTGCTTCCTGGCCGATCCCCTGAATAAGTCATCCTATAAATATGAAGCGGA CACGGTGGACCTGAACTGGTGTGTAATTTCCGACATGGAAGTCATTGAGCTGAATAAATG CACCTCAGGCCAGTCTTTTGAAGTCATCCTGAAGCCGCCCTCCTTTGATGGGGTGCCCGA GTTCAATGCCTCCCTACCCAGACGGCGAGACCCATCACTGGAAGAAATCCAGAAGAAACT GGAAGCAGCTGAGGAGCGAAGGAAGTACCAGGAAGCTGAGCTCCTGAAGCACCTGGCAGA GAAACGAGAACATGAAAGGGAGGTGATCCAAAAAGCCATTGAGGAGAACAACAACTTCAT CAAGATGGCTAAGGAAAAACTGGCCCAGAAGATGGAATCCAATAAGGAGAACCGGGAGGC CCACCTCGCTGCCATGTTGGAACGGCTGCAAGAGAAGGACAAGCACGCAGAGGAGGTGCG GAAAAACAAGGAGCTGAAGGAAGAGGCCTCCAGGTAAAGCCCAGAGGCACAGAGGTTTCC AGAATGCCGGACCGCTCCAGCAGCTCCGCAGTTCCTGAGGCAGCCTCGCCCACCGCTGGC TGCTCTCCCAGCACTGGGGTTTGGGGGGAGGGGGGTGGCCAGGGGCGTTTCCTCTGCTTT TTGGTGTTTGTACATGTAAAGAATTGACCAGTGAAGCCATCCTATTTGTTTCAGGGGAAC ATGATGGGGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTAATTGAGGGAGTGAAGAAGGCAGCAGCTCGCTTCTAACTGGACTGCAGATCTGGGAC AGTGTCCTGAGCTGGCAGCAGACCTACCCGACTTTCACTAGAACTCAGCTTTCACATTCC AGAAAACATGACCCTCGCTGCCTACAAAGAGAAGATGAAGGAGCTCCCCCTGGTGTCCCT GTTCTGCTCCTGCTTCCTGGCCGATCCCCTGAATAAGTCATCCTATAAATATGAAGCGGA CACGGTGGACCTGAACTGGTGTGTAATTTCCGACATGGAAGTCATTGAGCTGAATAAATG CACCTCAGGCCAGTCTTTTGAAGTCATCCTGAAGCCGCCCTCCTTTGATGGGGTGCCCGA GTTCAATGCCTCCCTACCCAGACGGCGAGACCCATCACTGGAAGAAATCCAGAAGAAACT GGAAGCAGCTGAGGAGCGAAGGAAGTACCAGGAAGCTGAGCTCCTGAAGCACCTGGCAGA GAAACGAGAACATGAAAGGGAGGTGATCCAAAAAGCCATTGAGGAGAACAACAACTTCAT CAAGATGGCTAAGGAAAAACTGGCCCAGAAGATGGAATCCAATAAGGAGAACCGGGAGGC CCACCTCGCTGCCATGTTGGAACGGCTGCAAGAGAAGGACAAGCACGCAGAGGAGGTGCG GAAAAACAAGGAGCTGAAGGAAGAGGCCTCCAGGTAAAGCCCAGAGGCACAGAGGTTTCC AGAATGCCGGACCGCTCCAGCAGCTCCGCAGTTCCTGAGGCAGCCTCGCCCACCGCTGGC TGCTCTCCCAGCACTGGGGTTTGGGGGGAGGGGGGTGGCCAGGGGCGTTTCCTCTGCTTT TTGGTGTTTGTACATGTAAAGAATTGACCAGTGAAGCCATCCTATTTGTTTCAGGGGAAC ATGATGGGGTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 232-445, gnl|bosTau2|chr8 (40172898-40173111) | |
| 232-445, gnl|canFam2|chr25 (33338038-33337853) | |
| 232-445, gnl|danRer3|chr20 (43537343-43537523) | |
| 232-445, gnl|dasNov1|scaffold_3345 (58438-58253) | |
| 232-445, gnl|echTel1|scaffold_283063 (4748-4563) | |
| 232-445, gnl|fr1|chrUn (65622294-65622479) | |
| 232-445, gnl|galGal2|chr3 (103336069-103335884) | |
| 232-445, gnl|hg17|chr8 (27154482-27154667) | |
| 232-445, gnl|Hg17|chr8 (27154701-27154488) | |
| 232-445, gnl|loxAfr1|scaffold_23627 (20062-20240) | |
| 232-445, gnl|mm7|chr14 (61217388-61217204) | |
| 232-445, gnl|Mm7|chr14 (61217168-61217381) | |
| 232-445, gnl|monDom2|scaffold_1 (152876302-152876485) | |
| 232-445, gnl|oryCun1|scaffold_211200 (178067-177882) | |
| 232-445, gnl|panTro1|chr7 (28124245-28124430) | |
| 232-445, gnl|rheMac2|chr8 (27388110-27388295) | |
| 232-445, gnl|rn3|chr15 (45809059-45808874) | |
| 232-445, gnl|tetNig1|chr14 (976364-976181) | |
| 232-445, gnl|xenTro1|scaffold_391 (35258-35441) | |
| 449-638, gnl|bosTau2|chr13 (35151029-35151218) | |
| 449-638, gnl|canFam2|chr24 (50257145-50257347) | |
| 449-638, gnl|danRer3|chrUn (40517821-40518020) | |
| 449-638, gnl|dasNov1|scaffold_199895 (698-888) | |
| 449-638, gnl|echTel1|scaffold_280142 (45765-45560) | |
| 449-638, gnl|fr1|chrUn (65622032-65622231) | |
| 449-638, gnl|galGal2|chr20 (9356279-9356083) | |
| 449-638, gnl|hg17|chr20 (61743901-61744106) | |
| 449-638, gnl|Hg17|chr20 (61744093-61743904) | |
| 449-638, gnl|loxAfr1|scaffold_23627 (18680-18882) | |
| 449-638, gnl|mm7|chr2 (181808124-181808329) | |
| 449-638, gnl|Mm7|chr2 (181808316-181808127) | |
| 449-638, gnl|monDom2|scaffold_1 (184137683-184137879) | |
| 449-638, gnl|oryCun1|scaffold_60483 (2200-1993) | |
| 449-638, gnl|panTro1|chr21 (64806199-64806404) | |
| 449-638, gnl|rheMac2|chr8 (27386969-27387162) | |
| 449-638, gnl|rn3|chr3 (170353673-170353875) | |
| 449-638, gnl|tetNig1|chr21_random (1633101-1633304) | |
| 449-638, gnl|xenTro1|scaffold_7835 (667-866) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 232-445, gnl|bosTau2|chr8 (40172898-40173111) | |
| 232-445, gnl|canFam2|chr25 (33338038-33337853) | |
| 232-445, gnl|danRer3|chr20 (43537343-43537523) | |
| 232-445, gnl|dasNov1|scaffold_3345 (58438-58253) | |
| 232-445, gnl|echTel1|scaffold_283063 (4748-4563) | |
| 232-445, gnl|fr1|chrUn (65622294-65622479) | |
| 232-445, gnl|galGal2|chr3 (103336069-103335884) | |
| 232-445, gnl|hg17|chr8 (27154482-27154667) | |
| 232-445, gnl|Hg17|chr8 (27154701-27154488) | |
| 232-445, gnl|loxAfr1|scaffold_23627 (20062-20240) | |
| 232-445, gnl|mm7|chr14 (61217388-61217204) | |
| 232-445, gnl|Mm7|chr14 (61217168-61217381) | |
| 232-445, gnl|monDom2|scaffold_1 (152876302-152876485) | |
| 232-445, gnl|oryCun1|scaffold_211200 (178067-177882) | |
| 232-445, gnl|panTro1|chr7 (28124245-28124430) | |
| 232-445, gnl|rheMac2|chr8 (27388110-27388295) | |
| 232-445, gnl|rn3|chr15 (45809059-45808874) | |
| 232-445, gnl|tetNig1|chr14 (976364-976181) | |
| 232-445, gnl|xenTro1|scaffold_391 (35258-35441) | |
| 449-638, gnl|bosTau2|chr13 (35151029-35151218) | |
| 449-638, gnl|canFam2|chr24 (50257145-50257347) | |
| 449-638, gnl|danRer3|chrUn (40517821-40518020) | |
| 449-638, gnl|dasNov1|scaffold_199895 (698-888) | |
| 449-638, gnl|echTel1|scaffold_280142 (45765-45560) | |
| 449-638, gnl|fr1|chrUn (65622032-65622231) | |
| 449-638, gnl|galGal2|chr20 (9356279-9356083) | |
| 449-638, gnl|hg17|chr20 (61743901-61744106) | |
| 449-638, gnl|Hg17|chr20 (61744093-61743904) | |
| 449-638, gnl|loxAfr1|scaffold_23627 (18680-18882) | |
| 449-638, gnl|mm7|chr2 (181808124-181808329) | |
| 449-638, gnl|Mm7|chr2 (181808316-181808127) | |
| 449-638, gnl|monDom2|scaffold_1 (184137683-184137879) | |
| 449-638, gnl|oryCun1|scaffold_60483 (2200-1993) | |
| 449-638, gnl|panTro1|chr21 (64806199-64806404) | |
| 449-638, gnl|rheMac2|chr8 (27386969-27387162) | |
| 449-638, gnl|rn3|chr3 (170353673-170353875) | |
| 449-638, gnl|tetNig1|chr21_random (1633101-1633304) | |
| 449-638, gnl|xenTro1|scaffold_7835 (667-866) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| fhi (0.169578) | |
| ebs (0.118301) |