Non-Coding RNA Search

Ss1.1-rfhi4018b_c10.5

Sequence:


               
               GCTTATAACTTTCTCTGAAATATATTTATACCTATAACTTTATTCTTTTTTTTTTTTTTC
TTTTTCATTTGGGCAGGGGCTGCTTTAACCTAATGGGAATTGTTGTTATACTTTCTTGAC
TTTCTATTAATTTTTATTCTGGTTATCCATATTCACTTATTTGAAGGAAGGGTCCATCTT
CTAGAATAAACTGTAATAAATTTAGGGGAGTTACACACATATTAGAATTTCATTTCACTA
GTTTATGTTCTTCTGTTCTATTATAAATCCTATGAAGAAGAACTTTAAACTCTTGTTTTA
TCTAGAATCGAGCACTATTTTCTTTCAGATATGTTTTAAAGATCACAATTTTTTGTCTGC
CCAACAAAGGGTTAGGTAAATGAACTTAAAGTGGCACATGTGTGTTTCTGACTAAATTTT
ACTATAGCAAGTAAATGTTTAATGTGCTAACTACATGGAAGTGAGTTGATAAGAAATGAT
TTGATTCCAGAACCCAGAGATTATTATAAACAGTAGGTGAAATCTATTTATGAATTATGA
AATGTGTCAATGCAATGTATTTAAATGCATTTTTATATTATTTGGGTATATTATTCTCAT
GATTTGTTGTGCAATAGTTGTTTTTAAGAAATTTTCCTATGCATCATTTATTTTATTTTT
ATTTATTTTCACAAGTATTTTCCAGTGTGGTAGAATAAAAAGATGATTGTAAACTTAAAT
TGAAAATGTAAAAATTGCTTATATATTACTCTGAAAGTTATTAGCTTGAAAAAGTAAGAT
TATTCTGGCTGCTGTTGTCTCTTGTTCACTTTTTTTTTTAATAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTATAACTTTCTCTGAAATATATTTATACCTATAACTTTATTCTTTTTTTTTTTTTTC
TTTTTCATTTGGGCAGGGGCTGCTTTAACCTAATGGGAATTGTTGTTATACTTTCTTGAC
TTTCTATTAATTTTTATTCTGGTTATCCATATTCACTTATTTGAAGGAAGGGTCCATCTT
CTAGAATAAACTGTAATAAATTTAGGGGAGTTACACACATATTAGAATTTCATTTCACTA
GTTTATGTTCTTCTGTTCTATTATAAATCCTATGAAGAAGAACTTTAAACTCTTGTTTTA
TCTAGAATCGAGCACTATTTTCTTTCAGATATGTTTTAAAGATCACAATTTTTTGTCTGC
CCAACAAAGGGTTAGGTAAATGAACTTAAAGTGGCACATGTGTGTTTCTGACTAAATTTT
ACTATAGCAAGTAAATGTTTAATGTGCTAACTACATGGAAGTGAGTTGATAAGAAATGAT
TTGATTCCAGAACCCAGAGATTATTATAAACAGTAGGTGAAATCTATTTATGAATTATGA
AATGTGTCAATGCAATGTATTTAAATGCATTTTTATATTATTTGGGTATATTATTCTCAT
GATTTGTTGTGCAATAGTTGTTTTTAAGAAATTTTCCTATGCATCATTTATTTTATTTTT
ATTTATTTTCACAAGTATTTTCCAGTGTGGTAGAATAAAAAGATGATTGTAAACTTAAAT
TGAAAATGTAAAAATTGCTTATATATTACTCTGAAAGTTATTAGCTTGAAAAAGTAAGAT
TATTCTGGCTGCTGTTGTCTCTTGTTCACTTTTTTTTTTAATAACAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               460-697, gnl|bosTau2|chr11 (18629916-18629670)
               

               
               460-697, gnl|Hg17|chr8 (79794153-79794379)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               460-697, gnl|bosTau2|chr11 (18629916-18629670)
               

               
               460-697, gnl|Hg17|chr8 (79794153-79794379)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fco (0.314416)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)

	460-697, gnl\|bosTau2\|chr11 (18629916-18629670)
	460-697, gnl\|Hg17\|chr8 (79794153-79794379)

	fco (0.314416)
	fce (0.271592)
	fcc (0.197785)
	sag (0.182715)
	fhi (0.169578)