Non-Coding RNA Search

Ss1.1-rfhi4019b_n22.5

Sequence:


               
               CCAGAGGAAATTAACTGATGTATTCGGCCCAGCAATGTTTTTCTTCCCTCACAAAGGGAA
ATATATGCAGGCCTTCCAAGAGCATAGCCTCCCCATCTGGGACTAGCTGGAGAGATAAAG
GTGGAGGGGCTCTCGGGAGCCTGTCCGGGGCAGTTTCAGACCATCTTCTAGGACTAGCAG
GTGCAAGTCTATCTCGGCGCTTTCAGATGTAACTGGCCCTCCTGCTGTGTGCCTTGAGTC
CCATTGCCTCTTCTTCAGGCCTTCAGCAGTGCAGGTAACACTTTCTCTGAAGACCCTCTG
GTAGGTCACTGGCCTCTCCAAGTCTCTTTCTCACCTTGGGAACCCACAGGTTCAGGAGCC
ACAGCAGCCGGGTCTAAAAGAGGCCCTCCAAGCCACTTGCTCGCTTCCTCCTGGTCCAGG
CAAGCCCCTAGGGCCAGGCATCATTTGGACTTGACATTAGTTTGTTCTGTGCCTTCCTCT
CCAGGGGACGTCCGGAACCTCCTTGTCTGGATCAAGAAGAACTTGCTCAAAGAGCGGCCA
GAGTTGTTCATCCAGGGAGACAGCGTGTGAGTCCTTTCTTCCCTTCCCTGAGGAGGGCGG
GCACAGGGAAGGAGGCTCGAGCCCTGTCCTTGGTTCAGCCTCAGCTGCCTGCGGGGCCCT
CTTCTTCCCGCTCCCTGCAAGGAAAGGGCTGCTGCTGCCCAGCTCTGTCTGAAGTTTACT
TTCAGTTTTCTTATTACCACATTGGACTTTGGGTTGGTCTGTTTGTTTGTTTTTTTCCCA
AGGCCCAAGTCAGGAGATTGGTAAACTTATCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAGGAAATTAACTGATGTATTCGGCCCAGCAATGTTTTTCTTCCCTCACAAAGGGAA
ATATATGCAGGCCTTCCAAGAGCATAGCCTCCCCATCTGGGACTAGCTGGAGAGATAAAG
GTGGAGGGGCTCTCGGGAGCCTGTCCGGGGCAGTTTCAGACCATCTTCTAGGACTAGCAG
GTGCAAGTCTATCTCGGCGCTTTCAGATGTAACTGGCCCTCCTGCTGTGTGCCTTGAGTC
CCATTGCCTCTTCTTCAGGCCTTCAGCAGTGCAGGTAACACTTTCTCTGAAGACCCTCTG
GTAGGTCACTGGCCTCTCCAAGTCTCTTTCTCACCTTGGGAACCCACAGGTTCAGGAGCC
ACAGCAGCCGGGTCTAAAAGAGGCCCTCCAAGCCACTTGCTCGCTTCCTCCTGGTCCAGG
CAAGCCCCTAGGGCCAGGCATCATTTGGACTTGACATTAGTTTGTTCTGTGCCTTCCTCT
CCAGGGGACGTCCGGAACCTCCTTGTCTGGATCAAGAAGAACTTGCTCAAAGAGCGGCCA
GAGTTGTTCATCCAGGGAGACAGCGTGTGAGTCCTTTCTTCCCTTCCCTGAGGAGGGCGG
GCACAGGGAAGGAGGCTCGAGCCCTGTCCTTGGTTCAGCCTCAGCTGCCTGCGGGGCCCT
CTTCTTCCCGCTCCCTGCAAGGAAAGGGCTGCTGCTGCCCAGCTCTGTCTGAAGTTTACT
TTCAGTTTTCTTATTACCACATTGGACTTTGGGTTGGTCTGTTTGTTTGTTTTTTTCCCA
AGGCCCAAGTCAGGAGATTGGTAAACTTATCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               551-705, + strand, RNAz p=0.999574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               551-705, + strand, RNAz p=0.999574

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC011620, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC011620, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-816, gnl|bosTau2|chr11 (78271640-78272451)
               

               
               1-816, gnl|Hg17|chr9 (128229118-128229952)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr11 (78271640-78272451)
               

               
               1-816, gnl|Hg17|chr9 (128229118-128229952)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	1-816, gnl\|bosTau2\|chr11 (78271640-78272451)
	1-816, gnl\|Hg17\|chr9 (128229118-128229952)