Non-Coding RNA Search

Ss1.1-rfhi4020b_d13.5

Sequence:


               
               AGTGGATAATTACGTTAATTCTCCTCCCGCTGCCACCTTGCCTTTGCATTTTCAGTTCTA
CACCCCTTCTGAATTTCAATGGTAAAAGCTCTCCAAACTTTGGGTGGTTTGTGGCTCTCG
AGTTTTTAGAGAGCTCTTGTCACTGTTCTCTAAGAAGAAAGAAGGACAGGCAAATTTTTT
TTTTAACCAAAACCAAAAACAAAAACCAATCACATTTCATAAAACCGTGATGAATTGTGG
ATACGTGAGAGGGCTTAAACATTCCTAAATGTGGATCTGTGAATTTAATAAATTAACCCC
ATCGATATACTCCTTCAGTGCAGGGATTTTTTTTTTTTTTTTTTCTTGCAACAGCCTTGC
TCATATTCCAGGTGTAGCTAAGCAAACCCCTGTTTTAAAGCAGGAGCCTTATTTGATTCA
GTGTAGATGTTTTCCTGTCTATCCTTTGTGACAGGGCCTTTTACATGAGTGTTTTTTCTT
TTTGTATGTGTTATGTGTTTGTTGTATTAAATAAAGAGGAATGTACATATTAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGATAATTACGTTAATTCTCCTCCCGCTGCCACCTTGCCTTTGCATTTTCAGTTCTA
CACCCCTTCTGAATTTCAATGGTAAAAGCTCTCCAAACTTTGGGTGGTTTGTGGCTCTCG
AGTTTTTAGAGAGCTCTTGTCACTGTTCTCTAAGAAGAAAGAAGGACAGGCAAATTTTTT
TTTTAACCAAAACCAAAAACAAAAACCAATCACATTTCATAAAACCGTGATGAATTGTGG
ATACGTGAGAGGGCTTAAACATTCCTAAATGTGGATCTGTGAATTTAATAAATTAACCCC
ATCGATATACTCCTTCAGTGCAGGGATTTTTTTTTTTTTTTTTTCTTGCAACAGCCTTGC
TCATATTCCAGGTGTAGCTAAGCAAACCCCTGTTTTAAAGCAGGAGCCTTATTTGATTCA
GTGTAGATGTTTTCCTGTCTATCCTTTGTGACAGGGCCTTTTACATGAGTGTTTTTTCTT
TTTGTATGTGTTATGTGTTTGTTGTATTAAATAAAGAGGAATGTACATATTAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               106-225, - strand, RNAz p=0.871358
               

               
               305-407, - strand, RNAz p=0.847014

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-225, - strand, RNAz p=0.871358
               

               
               305-407, - strand, RNAz p=0.847014

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-532, gnl|bosTau2|chr4 (59725465-59724952)
               

               
               6-532, gnl|Hg17|chr7 (138449707-138450237)
               

               
               6-532, gnl|Mm7|chr6 (38443174-38443689)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-532, gnl|bosTau2|chr4 (59725465-59724952)
               

               
               6-532, gnl|Hg17|chr7 (138449707-138450237)
               

               
               6-532, gnl|Mm7|chr6 (38443174-38443689)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)

	106-225, - strand, RNAz p=0.871358
	305-407, - strand, RNAz p=0.847014

	6-532, gnl\|bosTau2\|chr4 (59725465-59724952)
	6-532, gnl\|Hg17\|chr7 (138449707-138450237)
	6-532, gnl\|Mm7\|chr6 (38443174-38443689)