Non-Coding RNA Search

Ss1.1-rfhi4020b_f4.5

Sequence:


               
               GACACACTGAGGTTGCACCAGCTTGTGGAAACGGTGGAGCTAAAGTGAGGGGAATGGGCT
GGGGTGGGGACAGGAAGGACGTGCCCCTTGTGCCTCTATTACAGGGCTGGGTCCCTCTGG
CCTTTTGGCTCCAAGATAGTTTTATTTTCAGTCCCTTCCTCTTACTGGACAGTAGCACAA
AGCACTGCCTTCAGTCATTCTGGGGAGCTCCCATCCTTTTATTTGTCAATGCAGTGGTGT
ACTGATTAATATTTAACAACCCAGCACTTTCAGGAAGACAGCCCTGATATGTAGCTTTTG
CTGATTCCCATGGTGTAAATTCTCTCACCATGGTTGATTTCAAGCTGCCACCATGACATC
ACTGAGTGTGACGCTGAGAAGAGAGGAGAGCTGTGCAGGCCATTGTGTAGTATTTTCACC
ATACAAATCGAATAGACACAAATAACCTGAAGAGCA------------------------
------------CTGCTTTTCTGGTAATGATTTGGCTATATGTTCATATAATAAATATAT
GTTTATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACACTGAGGTTGCACCAGCTTGTGGAAACGGTGGAGCTAAAGTGAGGGGAATGGGCT
GGGGTGGGGACAGGAAGGACGTGCCCCTTGTGCCTCTATTACAGGGCTGGGTCCCTCTGG
CCTTTTGGCTCCAAGATAGTTTTATTTTCAGTCCCTTCCTCTTACTGGACAGTAGCACAA
AGCACTGCCTTCAGTCATTCTGGGGAGCTCCCATCCTTTTATTTGTCAATGCAGTGGTGT
ACTGATTAATATTTAACAACCCAGCACTTTCAGGAAGACAGCCCTGATATGTAGCTTTTG
CTGATTCCCATGGTGTAAATTCTCTCACCATGGTTGATTTCAAGCTGCCACCATGACATC
ACTGAGTGTGACGCTGAGAAGAGAGGAGAGCTGTGCAGGCCATTGTGTAGTATTTTCACC
ATACAAATCGAATAGACACAAATAACCTGAAGAGCA------------------------
------------CTGCTTTTCTGGTAATGATTTGGCTATATGTTCATATAATAAATATAT
GTTTATAAAAAAAAAAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-132, gnl|bosTau2|chr19 (34437057-34436925)
               

               
               1-132, gnl|canFam2|chr9 (25722580-25722409)
               

               
               1-132, gnl|hg17|chr17 (35594369-35594550)
               

               
               1-132, gnl|Hg17|chr17 (35594413-35594541)
               

               
               1-132, gnl|loxAfr1|scaffold_4088 (72983-72810)
               

               
               1-132, gnl|mm7|chr11 (98951607-98951763)
               

               
               1-132, gnl|Mm7|chr11 (98951651-98951757)
               

               
               1-132, gnl|monDom2|scaffold_18 (49382281-49382479)
               

               
               1-132, gnl|panTro1|chr19 (38834371-38834552)
               

               
               1-132, gnl|rheMac2|chr16 (50296585-50296766)
               

               
               1-132, gnl|rn3|chr10 (87626978-87627135)
               


               
               340-457, gnl|bosTau2|chr19 (34436874-34436758)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-132, gnl|bosTau2|chr19 (34437057-34436925)
               

               
               1-132, gnl|canFam2|chr9 (25722580-25722409)
               

               
               1-132, gnl|hg17|chr17 (35594369-35594550)
               

               
               1-132, gnl|Hg17|chr17 (35594413-35594541)
               

               
               1-132, gnl|loxAfr1|scaffold_4088 (72983-72810)
               

               
               1-132, gnl|mm7|chr11 (98951607-98951763)
               

               
               1-132, gnl|Mm7|chr11 (98951651-98951757)
               

               
               1-132, gnl|monDom2|scaffold_18 (49382281-49382479)
               

               
               1-132, gnl|panTro1|chr19 (38834371-38834552)
               

               
               1-132, gnl|rheMac2|chr16 (50296585-50296766)
               

               
               1-132, gnl|rn3|chr10 (87626978-87627135)
               


               
               340-457, gnl|bosTau2|chr19 (34436874-34436758)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               fhi (0.169578)

	1-132, gnl\|bosTau2\|chr19 (34437057-34436925)
	1-132, gnl\|canFam2\|chr9 (25722580-25722409)
	1-132, gnl\|hg17\|chr17 (35594369-35594550)
	1-132, gnl\|Hg17\|chr17 (35594413-35594541)
	1-132, gnl\|loxAfr1\|scaffold_4088 (72983-72810)
	1-132, gnl\|mm7\|chr11 (98951607-98951763)
	1-132, gnl\|Mm7\|chr11 (98951651-98951757)
	1-132, gnl\|monDom2\|scaffold_18 (49382281-49382479)
	1-132, gnl\|panTro1\|chr19 (38834371-38834552)
	1-132, gnl\|rheMac2\|chr16 (50296585-50296766)
	1-132, gnl\|rn3\|chr10 (87626978-87627135)

	340-457, gnl\|bosTau2\|chr19 (34436874-34436758)