Non-Coding RNA Search

Ss1.1-rfhi4022b_n3.5

Sequence:


               
               AAATACTGAAAGTATTCAGCCTACGAGGCCCACTGTATCAACATGACCCTGTCTTCCCGT
TGTGTTGATGCAACTACATCCTTCTTGTCCAAAACCTTTCCTAATCTCAAGTCGTTGGCC
CTCAACCCACCCTTTGGTTTGTCTGTGTGGCATCTCCATCCAGAACTGGAATGGGATAAA
GAATCCGCCTTTTTCATAGAGGATATCTTTGTCATTCTACAATCCTGAGACAGATGTAAA
GTGACAGGGAGGATCAAAAAGGTTCCATTTTAATCCATAAGCCTCACTTTAATCAAACCA
CATTGCTATATCAGAAATATCCCCCAAACACCACAAGACCTGCAGAGTTGTTGCCCTAAA
ATGTATAATTAGTGAAAATGTTACCTCCGCTGTCATTTTAAAGCATAACATAAAGAATGT
TATTATGTAGTATAAGTGCTGGACAAGAAAAATTCTGCTATTTTAGACCATTATCAGCAT
TCTGTTTGTGTGTGCATGTGTGTGTGTGTATACACAACACATTCTCAGAATATATATATA
TATTTTTTTTTTTTCACACACTCCCAATTAAGAGTTGTGTGAAAGCTGCACAGGATTAGA
GGCATCTATGTTATCACTTTCGCTCTTTGATTACTCTTGTTCTATTTTGGTTACCAAGGA
AGAAAGGACGTGGATGAACTGATATGAATAAATAAAGGAGCAAATTCGCCCATAACAATT
CAGTCTTAGTATGATCTCTTCTAAGTGGTAGCTTTATTCTCTTTCCTTCTGGAAGAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATACTGAAAGTATTCAGCCTACGAGGCCCACTGTATCAACATGACCCTGTCTTCCCGT
TGTGTTGATGCAACTACATCCTTCTTGTCCAAAACCTTTCCTAATCTCAAGTCGTTGGCC
CTCAACCCACCCTTTGGTTTGTCTGTGTGGCATCTCCATCCAGAACTGGAATGGGATAAA
GAATCCGCCTTTTTCATAGAGGATATCTTTGTCATTCTACAATCCTGAGACAGATGTAAA
GTGACAGGGAGGATCAAAAAGGTTCCATTTTAATCCATAAGCCTCACTTTAATCAAACCA
CATTGCTATATCAGAAATATCCCCCAAACACCACAAGACCTGCAGAGTTGTTGCCCTAAA
ATGTATAATTAGTGAAAATGTTACCTCCGCTGTCATTTTAAAGCATAACATAAAGAATGT
TATTATGTAGTATAAGTGCTGGACAAGAAAAATTCTGCTATTTTAGACCATTATCAGCAT
TCTGTTTGTGTGTGCATGTGTGTGTGTGTATACACAACACATTCTCAGAATATATATATA
TATTTTTTTTTTTTCACACACTCCCAATTAAGAGTTGTGTGAAAGCTGCACAGGATTAGA
GGCATCTATGTTATCACTTTCGCTCTTTGATTACTCTTGTTCTATTTTGGTTACCAAGGA
AGAAAGGACGTGGATGAACTGATATGAATAAATAAAGGAGCAAATTCGCCCATAACAATT
CAGTCTTAGTATGATCTCTTCTAAGTGGTAGCTTTATTCTCTTTCCTTCTGGAAGAGATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               449-597, + strand, RNAz p=0.990388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-597, + strand, RNAz p=0.990388

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               517-599, + strand, RNAmicro p=0.999763

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               517-599, + strand, RNAmicro p=0.999763

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr11 (79835874-79835086)
               

               
               1-780, gnl|Hg17|chr13 (36168906-36169709)
               

               
               1-780, gnl|Mm7|chr3 (55027385-55026636)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr11 (79835874-79835086)
               

               
               1-780, gnl|Hg17|chr13 (36168906-36169709)
               

               
               1-780, gnl|Mm7|chr3 (55027385-55026636)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	1-780, gnl\|bosTau2\|chr11 (79835874-79835086)
	1-780, gnl\|Hg17\|chr13 (36168906-36169709)
	1-780, gnl\|Mm7\|chr3 (55027385-55026636)