Non-Coding RNA Search

Ss1.1-rfhi4023b_k10.5

Sequence:


               
               CAAAAGGAGGTCTTACCCCAGGTCCTGATTCCTTACTCTGTTTTAAACTTTGGATACCAA
ACCAAAAAAGAAAAACAAAGGATCTTAGAAGAAGCAAGGAAACACGTCTTTGAATCCCTG
GAAAAGAAGACTGTCCAGAGCAAATTGTGAATAAAATACGCGTTGAAAAAAAAGGCGTTG
AGGGGGGAGGGGCTAGCCAAGGCAGAAGGGCCAGTAAAATCGTCACAAACTTTGCTTCCT
TACTGTTTCAATTTTCTGCTCTTTTTGAATGGACGGGCATCCACCTCGTCAGTGGGTTGT
TTTTGTTTTTATTTCCATACGCGCTGAGGTTCGGGCGCTTGGTGGCTTTGGAGACCTTGT
GGAATAGACTGGCCTGACCGGCTTGGACTCTAATTCATAGGTGCGTTCTTGTTTTCTTTG
GTGTCTCACAAACTATCCAACTGTTGAATAAGATTATAAATATGTTAATACCAGCTTTTT
CCAATAAAATAACAAACGTTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAGGAGGTCTTACCCCAGGTCCTGATTCCTTACTCTGTTTTAAACTTTGGATACCAA
ACCAAAAAAGAAAAACAAAGGATCTTAGAAGAAGCAAGGAAACACGTCTTTGAATCCCTG
GAAAAGAAGACTGTCCAGAGCAAATTGTGAATAAAATACGCGTTGAAAAAAAAGGCGTTG
AGGGGGGAGGGGCTAGCCAAGGCAGAAGGGCCAGTAAAATCGTCACAAACTTTGCTTCCT
TACTGTTTCAATTTTCTGCTCTTTTTGAATGGACGGGCATCCACCTCGTCAGTGGGTTGT
TTTTGTTTTTATTTCCATACGCGCTGAGGTTCGGGCGCTTGGTGGCTTTGGAGACCTTGT
GGAATAGACTGGCCTGACCGGCTTGGACTCTAATTCATAGGTGCGTTCTTGTTTTCTTTG
GTGTCTCACAAACTATCCAACTGTTGAATAAGATTATAAATATGTTAATACCAGCTTTTT
CCAATAAAATAACAAACGTTACAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               5-504, gnl|bosTau2|chr6 (59188589-59189124)
               

               
               5-504, gnl|Hg17|chr4 (6440939-6440386)
               

               
               5-504, gnl|Mm7|chr5 (36035914-36036468)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-504, gnl|bosTau2|chr6 (59188589-59189124)
               

               
               5-504, gnl|Hg17|chr4 (6440939-6440386)
               

               
               5-504, gnl|Mm7|chr5 (36035914-36036468)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.39557)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)

	5-504, gnl\|bosTau2\|chr6 (59188589-59189124)
	5-504, gnl\|Hg17\|chr4 (6440939-6440386)
	5-504, gnl\|Mm7\|chr5 (36035914-36036468)

	fcc (0.39557)
	fhi (0.339155)
	fce (0.271592)
	ece (0.229305)
	hyp (0.142837)
	ese (0.126502)