Non-Coding RNA Search

Ss1.1-rfhi4023b_m17.5

Sequence:


               
               CTCTCTGCTGGGGAGCCGGTGCCGGCCCGCGCCGGGGAGGAGGCTCTGGCAGCCTGGGCC
AGGAGGTGGCAGGGGGCCGCGGATCCGCCGGCTACCGACTCGTCCTGCCATGTGACGCTG
CCCTCCGCCCAGCGACCCCCGGCGCGCCCCTGGCCCGCGCTCGCGCTCCTTCGCGCTGCG
CACCATGCTTCTGCCGGGACATGCGCGCCCACTGCCCGCGCCCCAGCCCGCACAGCATCC
CGGCCTCCGCAGGCAGGTAGAGCCGCCCGGGCAGCTGCTGCGCCTCTTCTACTGCACTGT
CCTGGTCTGCTCCAAAGAGATCTCAGCGCTCACGGACTTCTCCGGTTACCTCACCAAACT
CCTGCAAAACCACACCGCCTATGCCTGTGATGGGGACCACTTGAATCTGCAGTGCCCTCG
GCATTCCACCATCAGCGTGCAGTCGGCATTTTATGGGCCAGATTACCAAATGTGTAGCAC
ACAGCAGCCTGCCTCCCAGCGGGAAGACAGCCTAACCTGTATGGCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCTGCTGGGGAGCCGGTGCCGGCCCGCGCCGGGGAGGAGGCTCTGGCAGCCTGGGCC
AGGAGGTGGCAGGGGGCCGCGGATCCGCCGGCTACCGACTCGTCCTGCCATGTGACGCTG
CCCTCCGCCCAGCGACCCCCGGCGCGCCCCTGGCCCGCGCTCGCGCTCCTTCGCGCTGCG
CACCATGCTTCTGCCGGGACATGCGCGCCCACTGCCCGCGCCCCAGCCCGCACAGCATCC
CGGCCTCCGCAGGCAGGTAGAGCCGCCCGGGCAGCTGCTGCGCCTCTTCTACTGCACTGT
CCTGGTCTGCTCCAAAGAGATCTCAGCGCTCACGGACTTCTCCGGTTACCTCACCAAACT
CCTGCAAAACCACACCGCCTATGCCTGTGATGGGGACCACTTGAATCTGCAGTGCCCTCG
GCATTCCACCATCAGCGTGCAGTCGGCATTTTATGGGCCAGATTACCAAATGTGTAGCAC
ACAGCAGCCTGCCTCCCAGCGGGAAGACAGCCTAACCTGTATGGCGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|51490845|emb|CAH18582.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|51490845|emb|CAH18582.1|

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-346, gnl|bosTau2|chr1 (170596-170941)
               

               
               1-346, gnl|canFam2|chr31 (30194681-30195106)
               

               
               1-346, gnl|dasNov1|scaffold_2075 (6375-5962)
               

               
               1-346, gnl|echTel1|scaffold_166038 (4116-3705)
               

               
               1-346, gnl|hg17|chr21 (32706737-32707164)
               

               
               1-346, gnl|Hg17|chr21 (32706849-32707194)
               

               
               1-346, gnl|loxAfr1|scaffold_39177 (5824-5448)
               

               
               1-346, gnl|mm7|chr16 (90880885-90881305)
               

               
               1-346, gnl|Mm7|chr16 (90880999-90881335)
               

               
               1-346, gnl|monDom2|scaffold_29 (15723730-15723292)
               

               
               1-346, gnl|oryCun1|scaffold_53860 (158-579)
               

               
               1-346, gnl|panTro1|chr22 (32677714-32678141)
               

               
               1-346, gnl|rheMac2|chr3 (14099683-14099256)
               

               
               1-346, gnl|rn3|chr11 (30818577-30818992)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-346, gnl|bosTau2|chr1 (170596-170941)
               

               
               1-346, gnl|canFam2|chr31 (30194681-30195106)
               

               
               1-346, gnl|dasNov1|scaffold_2075 (6375-5962)
               

               
               1-346, gnl|echTel1|scaffold_166038 (4116-3705)
               

               
               1-346, gnl|hg17|chr21 (32706737-32707164)
               

               
               1-346, gnl|Hg17|chr21 (32706849-32707194)
               

               
               1-346, gnl|loxAfr1|scaffold_39177 (5824-5448)
               

               
               1-346, gnl|mm7|chr16 (90880885-90881305)
               

               
               1-346, gnl|Mm7|chr16 (90880999-90881335)
               

               
               1-346, gnl|monDom2|scaffold_29 (15723730-15723292)
               

               
               1-346, gnl|oryCun1|scaffold_53860 (158-579)
               

               
               1-346, gnl|panTro1|chr22 (32677714-32678141)
               

               
               1-346, gnl|rheMac2|chr3 (14099683-14099256)
               

               
               1-346, gnl|rn3|chr11 (30818577-30818992)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	1-346, gnl\|bosTau2\|chr1 (170596-170941)
	1-346, gnl\|canFam2\|chr31 (30194681-30195106)
	1-346, gnl\|dasNov1\|scaffold_2075 (6375-5962)
	1-346, gnl\|echTel1\|scaffold_166038 (4116-3705)
	1-346, gnl\|hg17\|chr21 (32706737-32707164)
	1-346, gnl\|Hg17\|chr21 (32706849-32707194)
	1-346, gnl\|loxAfr1\|scaffold_39177 (5824-5448)
	1-346, gnl\|mm7\|chr16 (90880885-90881305)
	1-346, gnl\|Mm7\|chr16 (90880999-90881335)
	1-346, gnl\|monDom2\|scaffold_29 (15723730-15723292)
	1-346, gnl\|oryCun1\|scaffold_53860 (158-579)
	1-346, gnl\|panTro1\|chr22 (32677714-32678141)
	1-346, gnl\|rheMac2\|chr3 (14099683-14099256)
	1-346, gnl\|rn3\|chr11 (30818577-30818992)