Ss1.1-rfhi4023b_o22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGACATCCTCGCTGCCGTAGCGCTAGATTGAGCCCAGAGTTTCGCCGCCCGAGCGATGG CAGAGGTGGAGGAAACCCTAAAGAGGATCCAGAGCCATAAAGGGGTGATAGGAACGATGG TTGTAAATGCAGAAGGCATTCCCATCCGAACGACCCTGGACAACTCGACCACGGTTCAGT ATGCAGGTCTTCTTCACCAGCTGACCGTGAAAGCCAAGGGCACAGTCCGAGACATCGACC CTCAGAACGACCTAACTTTCCTTAGGATCAGATCCAAGAAACATGAAATCATGGTAGCTC CAGATAAGGAGTACCTCCTGATTGTCATTCAGAATCCATGTGAATAGGCCTGCCATGGCC AGGCCAGGCCTGTCCTGTGATGCCAGGCTGGAGACACTGCACTCCTGAATGACCACGAAG AGTGTATTGCAATCTAAATGCTCTTGTGGCTGTTCCTTTCTAGTTTCACATTTAAACTCT TCTACATGTCTCATTTAGACCCTTTTGAATGTACTGTAAATTTGTGATTTAGCTATGCAA TAAATTCTGGTATGTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGACATCCTCGCTGCCGTAGCGCTAGATTGAGCCCAGAGTTTCGCCGCCCGAGCGATGG CAGAGGTGGAGGAAACCCTAAAGAGGATCCAGAGCCATAAAGGGGTGATAGGAACGATGG TTGTAAATGCAGAAGGCATTCCCATCCGAACGACCCTGGACAACTCGACCACGGTTCAGT ATGCAGGTCTTCTTCACCAGCTGACCGTGAAAGCCAAGGGCACAGTCCGAGACATCGACC CTCAGAACGACCTAACTTTCCTTAGGATCAGATCCAAGAAACATGAAATCATGGTAGCTC CAGATAAGGAGTACCTCCTGATTGTCATTCAGAATCCATGTGAATAGGCCTGCCATGGCC AGGCCAGGCCTGTCCTGTGATGCCAGGCTGGAGACACTGCACTCCTGAATGACCACGAAG AGTGTATTGCAATCTAAATGCTCTTGTGGCTGTTCCTTTCTAGTTTCACATTTAAACTCT TCTACATGTCTCATTTAGACCCTTTTGAATGTACTGTAAATTTGTGATTTAGCTATGCAA TAAATTCTGGTATGTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 134-312, gnl|bosTau2|chr13 (47380672-47380494) | |
| 134-312, gnl|canFam2|chr2 (44998422-44998251) | |
| 134-312, gnl|canFam2|chr36 (23061928-23062099) | |
| 134-312, gnl|danRer3|chrNA (55921748-55921919) | |
| 134-312, gnl|danRer3|chrNA (55921917-55921749) | |
| 134-312, gnl|dasNov1|scaffold_211318 (715-886) | |
| 134-312, gnl|dasNov1|scaffold_211318 (887-716) | |
| 134-312, gnl|echTel1|scaffold_94277 (4527-4356) | |
| 134-312, gnl|echTel1|scaffold_94277 (4355-4526) | |
| 134-312, gnl|fr1|chrUn (323202584-323202413) | |
| 134-312, gnl|fr1|chrUn (323202415-323202583) | |
| 134-312, gnl|galGal2|chr20 (1318738-1318901) | |
| 134-312, gnl|galGal2|chr20 (1318902-1318737) | |
| 134-312, gnl|hg17|chr12 (5563303-5563474) | |
| 134-312, gnl|hg17|chr18 (56314118-56314289) | |
| 134-312, gnl|Hg17|chr20 (32586091-32586269) | |
| 134-312, gnl|loxAfr1|scaffold_87653 (1425-1254) | |
| 134-312, gnl|loxAfr1|scaffold_87653 (1253-1424) | |
| 134-312, gnl|mm7|chr2 (154988793-154988630) | |
| 134-312, gnl|mm7|chr2 (154988629-154988793) | |
| 134-312, gnl|Mm7|chr2 (154988627-154988805) | |
| 134-312, gnl|monDom2|scaffold_6 (12460587-12460758) | |
| 134-312, gnl|monDom2|scaffold_6 (12460759-12460588) | |
| 134-312, gnl|oryCun1|scaffold_162908 (3650-3821) | |
| 134-312, gnl|oryCun1|scaffold_162908 (3822-3651) | |
| 134-312, gnl|panTro1|chr10 (6070101-6070272) | |
| 134-312, gnl|panTro1|chr17 (53199839-53200010) | |
| 134-312, gnl|rheMac2|chr11 (5714340-5714511) | |
| 134-312, gnl|rheMac2|chr18 (53795267-53795437) | |
| 134-312, gnl|rn3|chr3 (41007927-41008098) | |
| 134-312, gnl|rn3|chr3 (41008099-41007928) | |
| 134-312, gnl|tetNig1|chrUn_random (84761037-84761208) | |
| 134-312, gnl|tetNig1|chrUn_random (84761206-84761038) | |
| 134-312, gnl|xenTro1|scaffold_35 (1393416-1393579) | |
| 134-312, gnl|xenTro1|scaffold_35 (1393580-1393415) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-312, gnl|bosTau2|chr13 (47380672-47380494) | |
| 134-312, gnl|canFam2|chr2 (44998422-44998251) | |
| 134-312, gnl|canFam2|chr36 (23061928-23062099) | |
| 134-312, gnl|danRer3|chrNA (55921748-55921919) | |
| 134-312, gnl|danRer3|chrNA (55921917-55921749) | |
| 134-312, gnl|dasNov1|scaffold_211318 (715-886) | |
| 134-312, gnl|dasNov1|scaffold_211318 (887-716) | |
| 134-312, gnl|echTel1|scaffold_94277 (4527-4356) | |
| 134-312, gnl|echTel1|scaffold_94277 (4355-4526) | |
| 134-312, gnl|fr1|chrUn (323202584-323202413) | |
| 134-312, gnl|fr1|chrUn (323202415-323202583) | |
| 134-312, gnl|galGal2|chr20 (1318738-1318901) | |
| 134-312, gnl|galGal2|chr20 (1318902-1318737) | |
| 134-312, gnl|hg17|chr12 (5563303-5563474) | |
| 134-312, gnl|hg17|chr18 (56314118-56314289) | |
| 134-312, gnl|Hg17|chr20 (32586091-32586269) | |
| 134-312, gnl|loxAfr1|scaffold_87653 (1425-1254) | |
| 134-312, gnl|loxAfr1|scaffold_87653 (1253-1424) | |
| 134-312, gnl|mm7|chr2 (154988793-154988630) | |
| 134-312, gnl|mm7|chr2 (154988629-154988793) | |
| 134-312, gnl|Mm7|chr2 (154988627-154988805) | |
| 134-312, gnl|monDom2|scaffold_6 (12460587-12460758) | |
| 134-312, gnl|monDom2|scaffold_6 (12460759-12460588) | |
| 134-312, gnl|oryCun1|scaffold_162908 (3650-3821) | |
| 134-312, gnl|oryCun1|scaffold_162908 (3822-3651) | |
| 134-312, gnl|panTro1|chr10 (6070101-6070272) | |
| 134-312, gnl|panTro1|chr17 (53199839-53200010) | |
| 134-312, gnl|rheMac2|chr11 (5714340-5714511) | |
| 134-312, gnl|rheMac2|chr18 (53795267-53795437) | |
| 134-312, gnl|rn3|chr3 (41007927-41008098) | |
| 134-312, gnl|rn3|chr3 (41008099-41007928) | |
| 134-312, gnl|tetNig1|chrUn_random (84761037-84761208) | |
| 134-312, gnl|tetNig1|chrUn_random (84761206-84761038) | |
| 134-312, gnl|xenTro1|scaffold_35 (1393416-1393579) | |
| 134-312, gnl|xenTro1|scaffold_35 (1393580-1393415) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ova (0.258264) | |
| mgp (0.230681) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cov (0.132153) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.258264) | |
| mgp (0.230681) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cov (0.132153) | |
| eje (0.0988338) |