Ss1.1-rfhi4025b_j15.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACACCTGAACCACCCCCATGCTGGACCCCAGTGTTCATAGCTAGGGCTTGAGCCCACAG ACCGGGCAGCCGAGGTGTTCGTGCCTTGAGGTCTTGCTCTCTCTGTCCCTTGTGGCTGTC CCTCCCTGCTTTGGGCCTGCGCCCCTGCTGAGAACACTGGGCCCCTTCACATTAGGGCTG ATGTCTCATACCCACCAGGGATCAGAGTGCTCCCGAGCTAACTTCAGCTGCAAAACCTTC AATCCCTCATCAGACCAAGTCTGAGGGGCTTGGTCTGAGGGGCTCCACCCCGCCTTCGTC ACTCTGCAGACCAGGGATTCTGCCAGACTGGGAGTCTTTTCAGCCATTCATTAGCTTAGT GTTCTTTTTCCTTCCTCTTCTTTTTACAGCCATGCCTGCAGCATATGAAAGTTCCCAGGC TACAGGTCAAATCAGAGCTGTGGCTGAGGCCTATGCAACACTGGGTCCAAGCCACATCTT TGACCTACGCTGCAACTTATGGCAACGCCAGATCCTTAACCCACTGAGCAGGGCCAAGAA TTGAACCGACATCCTCATGGATACCAGTTGGGTTCATTTCTGATGAGCCACGATGGAAAG TCCTAGCCTAGTGTTCTTTACTGATTCTGGCTCTTCATCCATTCCTGTGAGAGGCACTGC AGATGCCTCATGGATAAGACAAGGGTCCTGCAGATGTGTTCCTGTCTGGGCATCTGGTCC CAAGAGTTAGGCTTGGAAATGGGCAGGGCTAGATTCCAGAGGAATGGTTCTGGGCTCATG AGCAGACTGGCAATCAGCTAGTTCACACCTGAATAATACTGCAGTTGTCTACAGCCCATC TCCATTCTGGGTGGTCTGTGCCCACGCTGTACTGGATGTTAAATAAATATCCCAAATATC ACTCCTTTTGAGGGACTGCACAGCCTTGCTGAGGACCTCAGCCAGGAAGTAGAGTAGGGC TCACCCCCATGTGCCTGCTCGCTTTGACTTAGCAAGAGGAAAGAATGGTCTGGGGTGATT ATCCTCACTTCTGTCTTTCTCTTGGTCAGCTCTGGAAAGTTCCAGTCTTTGAGGGAGGAA AGGACTACGAAAGGAGAGTGATAGAAATGGGAGGGGAGCGACTTAATGGTTCTGCTTCCC AGCGCTAAAATTCCACCATCACTTTCAGCCCCATATTGGAAAACAAATACACACAAGCCA TCATCAGTCTCTAATACTTCAGCTTCATGGACATGGGGCCCTGGGCCCTGGCAGCAACGG ACCAGGACGAACAGGAGAGTCCACGGGTGCCAATGACCAACACAGCAGCCAGGCCCAGGA AGCTGGGCTGTTTACCCTGGAGACCTGACTGGTCTGTGATCCCACAGGAGTGAGATCCTC CTGTGGCATCTTCCTTGTCTTCAGAGCCCCTAGTGTCTGGTTTTGTTAATCTCGGACTTG TTCATTCATTCATCTCTAATAAAAGATTTTTTTTGGAGTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACACCTGAACCACCCCCATGCTGGACCCCAGTGTTCATAGCTAGGGCTTGAGCCCACAG ACCGGGCAGCCGAGGTGTTCGTGCCTTGAGGTCTTGCTCTCTCTGTCCCTTGTGGCTGTC CCTCCCTGCTTTGGGCCTGCGCCCCTGCTGAGAACACTGGGCCCCTTCACATTAGGGCTG ATGTCTCATACCCACCAGGGATCAGAGTGCTCCCGAGCTAACTTCAGCTGCAAAACCTTC AATCCCTCATCAGACCAAGTCTGAGGGGCTTGGTCTGAGGGGCTCCACCCCGCCTTCGTC ACTCTGCAGACCAGGGATTCTGCCAGACTGGGAGTCTTTTCAGCCATTCATTAGCTTAGT GTTCTTTTTCCTTCCTCTTCTTTTTACAGCCATGCCTGCAGCATATGAAAGTTCCCAGGC TACAGGTCAAATCAGAGCTGTGGCTGAGGCCTATGCAACACTGGGTCCAAGCCACATCTT TGACCTACGCTGCAACTTATGGCAACGCCAGATCCTTAACCCACTGAGCAGGGCCAAGAA TTGAACCGACATCCTCATGGATACCAGTTGGGTTCATTTCTGATGAGCCACGATGGAAAG TCCTAGCCTAGTGTTCTTTACTGATTCTGGCTCTTCATCCATTCCTGTGAGAGGCACTGC AGATGCCTCATGGATAAGACAAGGGTCCTGCAGATGTGTTCCTGTCTGGGCATCTGGTCC CAAGAGTTAGGCTTGGAAATGGGCAGGGCTAGATTCCAGAGGAATGGTTCTGGGCTCATG AGCAGACTGGCAATCAGCTAGTTCACACCTGAATAATACTGCAGTTGTCTACAGCCCATC TCCATTCTGGGTGGTCTGTGCCCACGCTGTACTGGATGTTAAATAAATATCCCAAATATC ACTCCTTTTGAGGGACTGCACAGCCTTGCTGAGGACCTCAGCCAGGAAGTAGAGTAGGGC TCACCCCCATGTGCCTGCTCGCTTTGACTTAGCAAGAGGAAAGAATGGTCTGGGGTGATT ATCCTCACTTCTGTCTTTCTCTTGGTCAGCTCTGGAAAGTTCCAGTCTTTGAGGGAGGAA AGGACTACGAAAGGAGAGTGATAGAAATGGGAGGGGAGCGACTTAATGGTTCTGCTTCCC AGCGCTAAAATTCCACCATCACTTTCAGCCCCATATTGGAAAACAAATACACACAAGCCA TCATCAGTCTCTAATACTTCAGCTTCATGGACATGGGGCCCTGGGCCCTGGCAGCAACGG ACCAGGACGAACAGGAGAGTCCACGGGTGCCAATGACCAACACAGCAGCCAGGCCCAGGA AGCTGGGCTGTTTACCCTGGAGACCTGACTGGTCTGTGATCCCACAGGAGTGAGATCCTC CTGTGGCATCTTCCTTGTCTTCAGAGCCCCTAGTGTCTGGTTTTGTTAATCTCGGACTTG TTCATTCATTCATCTCTAATAAAAGATTTTTTTTGGAGTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 231-325, + strand, RNAz p=0.834534 | |
| 679-797, - strand, RNAz p=0.815247 | |
| 1247-1370, + strand, RNAz p=0.998072 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 231-325, + strand, RNAz p=0.834534 | |
| 679-797, - strand, RNAz p=0.815247 | |
| 1247-1370, + strand, RNAz p=0.998072 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC023519, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 5-181, gnl|bosTau2|chr2 (82734011-82734196) | |
| 5-181, gnl|canFam2|chr2 (78886525-78886066) | |
| 5-181, gnl|echTel1|scaffold_293598 (56719-56340) | |
| 5-181, gnl|hg17|chr1 (23501130-23501620) | |
| 5-181, gnl|Hg17|chr1 (23501633-23501457) | |
| 5-181, gnl|loxAfr1|scaffold_1926 (108660-109146) | |
| 5-181, gnl|mm7|chr4 (135622700-135622336) | |
| 5-181, gnl|oryCun1|scaffold_196062 (79950-79500) | |
| 5-181, gnl|panTro1|chr1 (23876392-23876882) | |
| 5-181, gnl|rheMac2|chr1 (26032599-26033080) | |
| 5-181, gnl|rn3|chr5 (154986367-154986008) | |
| 199-367, gnl|bosTau2|chr2 (82734254-82734430) | |
| 199-367, gnl|canFam2|chr2 (78886525-78886066) | |
| 199-367, gnl|echTel1|scaffold_293598 (56719-56340) | |
| 199-367, gnl|hg17|chr1 (23501130-23501620) | |
| 199-367, gnl|Hg17|chr1 (23501403-23501212) | |
| 199-367, gnl|loxAfr1|scaffold_1926 (108660-109146) | |
| 199-367, gnl|mm7|chr4 (135622700-135622336) | |
| 199-367, gnl|Mm7|chr4 (135622466-135622617) | |
| 199-367, gnl|oryCun1|scaffold_196062 (79950-79500) | |
| 199-367, gnl|panTro1|chr1 (23876392-23876882) | |
| 199-367, gnl|rheMac2|chr1 (26032599-26033080) | |
| 199-367, gnl|rn3|chr5 (154986367-154986008) | |
| 604-1370, gnl|bosTau2|chr2 (82734415-82735206) | |
| 604-1370, gnl|Hg17|chr1 (23501227-23500453) | |
| 604-1370, gnl|Mm7|chr4 (135622599-135623319) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-181, gnl|bosTau2|chr2 (82734011-82734196) | |
| 5-181, gnl|canFam2|chr2 (78886525-78886066) | |
| 5-181, gnl|echTel1|scaffold_293598 (56719-56340) | |
| 5-181, gnl|hg17|chr1 (23501130-23501620) | |
| 5-181, gnl|Hg17|chr1 (23501633-23501457) | |
| 5-181, gnl|loxAfr1|scaffold_1926 (108660-109146) | |
| 5-181, gnl|mm7|chr4 (135622700-135622336) | |
| 5-181, gnl|oryCun1|scaffold_196062 (79950-79500) | |
| 5-181, gnl|panTro1|chr1 (23876392-23876882) | |
| 5-181, gnl|rheMac2|chr1 (26032599-26033080) | |
| 5-181, gnl|rn3|chr5 (154986367-154986008) | |
| 199-367, gnl|bosTau2|chr2 (82734254-82734430) | |
| 199-367, gnl|canFam2|chr2 (78886525-78886066) | |
| 199-367, gnl|echTel1|scaffold_293598 (56719-56340) | |
| 199-367, gnl|hg17|chr1 (23501130-23501620) | |
| 199-367, gnl|Hg17|chr1 (23501403-23501212) | |
| 199-367, gnl|loxAfr1|scaffold_1926 (108660-109146) | |
| 199-367, gnl|mm7|chr4 (135622700-135622336) | |
| 199-367, gnl|Mm7|chr4 (135622466-135622617) | |
| 199-367, gnl|oryCun1|scaffold_196062 (79950-79500) | |
| 199-367, gnl|panTro1|chr1 (23876392-23876882) | |
| 199-367, gnl|rheMac2|chr1 (26032599-26033080) | |
| 199-367, gnl|rn3|chr5 (154986367-154986008) | |
| 604-1370, gnl|bosTau2|chr2 (82734415-82735206) | |
| 604-1370, gnl|Hg17|chr1 (23501227-23500453) | |
| 604-1370, gnl|Mm7|chr4 (135622599-135623319) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| elu (0.385356) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eru (0.120048) | |
| clu (0.119646) | |
| eje (0.0988338) |