Non-Coding RNA Search

Ss1.1-rfhi4025b_n6.5

Sequence:


               
               GTCGGATTTATCCCGTAATTTCGGTTCCTGCAGCTGTGTGACCTCTGCAGCACTGTTTAT
AAAAAGAGCCCGATGGTGATGCTCTTTAAGACACGTTGCTGGCAAAGCCCGTGATGTAGA
CACCCCGGTGCCATCTCTCTGGTTTTTCGGGCAGCTTCTGTAGCTTTCTGTTGAAAGTCG
GGTGTGTGGGCATCTCTGAAGCTGTGTCAAATGTAATTTTGACAAACATGGATTGTCTGT
TTTGGCTTTTATTCTATAAATACCCAGCTAGCTAAGGTGTGCCTTCCCCTCGCGGTCCGC
GCTGGAAGCTGCTCGCTCCTCCTCGGCTCGCCCCCCACCCGCCACCCCAGCTGATGCATT
TATGCAGCAGTTTCCAACTTGAAACCATTGTGTCACATCTGTTGGAGAGATAATCACTCC
TTTTCCCTAACATCCTGCCAGCTTCTGTTTTTTGAAGTGTTTCAGTTGATTACCTGATGC
AAAAGCTATAAAATAAACACTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGATTTATCCCGTAATTTCGGTTCCTGCAGCTGTGTGACCTCTGCAGCACTGTTTAT
AAAAAGAGCCCGATGGTGATGCTCTTTAAGACACGTTGCTGGCAAAGCCCGTGATGTAGA
CACCCCGGTGCCATCTCTCTGGTTTTTCGGGCAGCTTCTGTAGCTTTCTGTTGAAAGTCG
GGTGTGTGGGCATCTCTGAAGCTGTGTCAAATGTAATTTTGACAAACATGGATTGTCTGT
TTTGGCTTTTATTCTATAAATACCCAGCTAGCTAAGGTGTGCCTTCCCCTCGCGGTCCGC
GCTGGAAGCTGCTCGCTCCTCCTCGGCTCGCCCCCCACCCGCCACCCCAGCTGATGCATT
TATGCAGCAGTTTCCAACTTGAAACCATTGTGTCACATCTGTTGGAGAGATAATCACTCC
TTTTCCCTAACATCCTGCCAGCTTCTGTTTTTTGAAGTGTTTCAGTTGATTACCTGATGC
AAAAGCTATAAAATAAACACTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-195, + strand, RNAz p=0.797736

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-195, + strand, RNAz p=0.797736

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB007917, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB007917, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-504, gnl|bosTau2|chr3 (41786268-41785742)
               

               
               2-504, gnl|Hg17|chr1 (87286369-87286874)
               

               
               2-504, gnl|Mm7|chr3 (144323782-144323343)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-504, gnl|bosTau2|chr3 (41786268-41785742)
               

               
               2-504, gnl|Hg17|chr1 (87286369-87286874)
               

               
               2-504, gnl|Mm7|chr3 (144323782-144323343)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	2-504, gnl\|bosTau2\|chr3 (41786268-41785742)
	2-504, gnl\|Hg17\|chr1 (87286369-87286874)
	2-504, gnl\|Mm7\|chr3 (144323782-144323343)