Ss1.1-rfhi4025b_p11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAAGCAAAGAGCGTTCTACTTTATGGGACCAAATGCAGTTCTGGGAAGATGCGTTCTTA GATGCTGTGATGTGGAGAGAGAAGGGATGGGTATGGACCAGGGTCCTCAGGAAATGATAG ACAGGTACCTGTCCCTTGGAGAACATGACCGGAAGCGGATAGAGGATGATGAGGATCGTT TGCTGGCCACACTCTTGCACAACATCATCTCCTACATGCTGCTGATGAAGGTGAATAAGA ATGATATCCGGAAGAAGGTGAGGCGCCTGATGGGAAAGTCCCATATTGGGCTTGTGTACA GCCAGCAAATCAACGAAGTGCTTGACCAGCTGGCAAACTTGAACGGACGTGACCTCTCCA TCCGATCCAGTGGCAGCCGGCACATGAAGAAGCAGACCTTTGTGGTACATGCTGGGACAG ACACAAATGGAGATATCTTTTTCATGGAGGTGTGTGACGACTGCGTGGTGTTGCGTAGTA ACATCGGGACAGTGTACGAGCGCTGGTGGTACGAGAAGCTCATCAACATGACCTACTGTC CTAAGACCAAGGTGCTCTGCTTGTGGCGCAGAAACGGTTCTGAGACCCAGCTCAACAAGT TCTACACCAAGAGATTATTGTAAATATTTCAGCTCCGTATTATTTATAGAAAATGTACAG ATGTGTGAATGTGAAATAAATGTCCTTAACTCCCAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAAGCAAAGAGCGTTCTACTTTATGGGACCAAATGCAGTTCTGGGAAGATGCGTTCTTA GATGCTGTGATGTGGAGAGAGAAGGGATGGGTATGGACCAGGGTCCTCAGGAAATGATAG ACAGGTACCTGTCCCTTGGAGAACATGACCGGAAGCGGATAGAGGATGATGAGGATCGTT TGCTGGCCACACTCTTGCACAACATCATCTCCTACATGCTGCTGATGAAGGTGAATAAGA ATGATATCCGGAAGAAGGTGAGGCGCCTGATGGGAAAGTCCCATATTGGGCTTGTGTACA GCCAGCAAATCAACGAAGTGCTTGACCAGCTGGCAAACTTGAACGGACGTGACCTCTCCA TCCGATCCAGTGGCAGCCGGCACATGAAGAAGCAGACCTTTGTGGTACATGCTGGGACAG ACACAAATGGAGATATCTTTTTCATGGAGGTGTGTGACGACTGCGTGGTGTTGCGTAGTA ACATCGGGACAGTGTACGAGCGCTGGTGGTACGAGAAGCTCATCAACATGACCTACTGTC CTAAGACCAAGGTGCTCTGCTTGTGGCGCAGAAACGGTTCTGAGACCCAGCTCAACAAGT TCTACACCAAGAGATTATTGTAAATATTTCAGCTCCGTATTATTTATAGAAAATGTACAG ATGTGTGAATGTGAAATAAATGTCCTTAACTCCCAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 229-341, - strand, RNAz p=0.876097 | |
| 246-341, - strand, RNAz p=0.984514 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 229-341, - strand, RNAz p=0.876097 | |
| 246-341, - strand, RNAz p=0.984514 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 5-126, gnl|bosTau2|chr15 (49009948-49009826) | |
| 5-126, gnl|canFam2|chr18 (45341468-45341336) | |
| 5-126, gnl|danRer3|chr7 (23313118-23312986) | |
| 5-126, gnl|echTel1|scaffold_215095 (469-337) | |
| 5-126, gnl|fr1|chrUn (94958197-94958325) | |
| 5-126, gnl|galGal2|chr5 (20358957-20358825) | |
| 5-126, gnl|hg17|chr11 (47287404-47287536) | |
| 5-126, gnl|Hg17|chr11 (47287408-47287530) | |
| 5-126, gnl|loxAfr1|scaffold_29136 (12122-12254) | |
| 5-126, gnl|mm7|chr2 (91005487-91005355) | |
| 5-126, gnl|Mm7|chr2 (91005481-91005359) | |
| 5-126, gnl|monDom2|scaffold_33 (13173239-13173371) | |
| 5-126, gnl|oryCun1|scaffold_208209 (766-634) | |
| 5-126, gnl|rheMac2|chr14 (24812823-24812691) | |
| 5-126, gnl|rn3|chr3 (75410765-75410633) | |
| 5-126, gnl|tetNig1|chr5 (11177267-11177395) | |
| 5-126, gnl|xenTro1|scaffold_922 (189689-189562) | |
| 229-341, gnl|bosTau2|chr15 (49008926-49008814) | |
| 229-341, gnl|canFam2|chr18 (45338372-45338219) | |
| 229-341, gnl|danRer3|chr7 (23311360-23311233) | |
| 229-341, gnl|dasNov1|scaffold_142236 (4811-4658) | |
| 229-341, gnl|fr1|chrUn (94958806-94958950) | |
| 229-341, gnl|galGal2|chr5 (20356713-20356578) | |
| 229-341, gnl|hg17|chr11 (47289840-47289993) | |
| 229-341, gnl|Hg17|chr11 (47289857-47289969) | |
| 229-341, gnl|loxAfr1|scaffold_29136 (13774-13926) | |
| 229-341, gnl|mm7|chr2 (91003301-91003148) | |
| 229-341, gnl|Mm7|chr2 (91003282-91003170) | |
| 229-341, gnl|monDom2|scaffold_33 (13174472-13174625) | |
| 229-341, gnl|oryCun1|scaffold_192945 (9564-9410) | |
| 229-341, gnl|panTro1|chr9 (47806630-47806783) | |
| 229-341, gnl|rheMac2|chr14 (24810402-24810249) | |
| 229-341, gnl|rn3|chr3 (75408718-75408565) | |
| 229-341, gnl|tetNig1|chr5 (11177654-11177782) | |
| 229-341, gnl|xenTro1|scaffold_922 (188814-188668) | |
| 448-612, gnl|bosTau2|chr15 (49000619-49000455) | |
| 448-612, gnl|canFam2|chr18 (45330736-45330538) | |
| 448-612, gnl|danRer3|chr7 (23310970-23310772) | |
| 448-612, gnl|dasNov1|scaffold_3175 (62654-62853) | |
| 448-612, gnl|echTel1|scaffold_323362 (51539-51342) | |
| 448-612, gnl|fr1|chrUn (94959163-94959357) | |
| 448-612, gnl|galGal2|chr5 (20355718-20355533) | |
| 448-612, gnl|hg17|chr11 (47301782-47301980) | |
| 448-612, gnl|Hg17|chr11 (47301796-47301960) | |
| 448-612, gnl|loxAfr1|scaffold_40430 (10198-10397) | |
| 448-612, gnl|mm7|chr2 (90994418-90994222) | |
| 448-612, gnl|Mm7|chr2 (90994404-90994240) | |
| 448-612, gnl|monDom2|scaffold_33 (13176646-13176842) | |
| 448-612, gnl|panTro1|chr9 (47818649-47818849) | |
| 448-612, gnl|rheMac2|chr14 (24797843-24797645) | |
| 448-612, gnl|rn3|chr3 (75400138-75399937) | |
| 448-612, gnl|tetNig1|chr5 (11178024-11178202) | |
| 448-612, gnl|xenTro1|scaffold_922 (187375-187179) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-126, gnl|bosTau2|chr15 (49009948-49009826) | |
| 5-126, gnl|canFam2|chr18 (45341468-45341336) | |
| 5-126, gnl|danRer3|chr7 (23313118-23312986) | |
| 5-126, gnl|echTel1|scaffold_215095 (469-337) | |
| 5-126, gnl|fr1|chrUn (94958197-94958325) | |
| 5-126, gnl|galGal2|chr5 (20358957-20358825) | |
| 5-126, gnl|hg17|chr11 (47287404-47287536) | |
| 5-126, gnl|Hg17|chr11 (47287408-47287530) | |
| 5-126, gnl|loxAfr1|scaffold_29136 (12122-12254) | |
| 5-126, gnl|mm7|chr2 (91005487-91005355) | |
| 5-126, gnl|Mm7|chr2 (91005481-91005359) | |
| 5-126, gnl|monDom2|scaffold_33 (13173239-13173371) | |
| 5-126, gnl|oryCun1|scaffold_208209 (766-634) | |
| 5-126, gnl|rheMac2|chr14 (24812823-24812691) | |
| 5-126, gnl|rn3|chr3 (75410765-75410633) | |
| 5-126, gnl|tetNig1|chr5 (11177267-11177395) | |
| 5-126, gnl|xenTro1|scaffold_922 (189689-189562) | |
| 229-341, gnl|bosTau2|chr15 (49008926-49008814) | |
| 229-341, gnl|canFam2|chr18 (45338372-45338219) | |
| 229-341, gnl|danRer3|chr7 (23311360-23311233) | |
| 229-341, gnl|dasNov1|scaffold_142236 (4811-4658) | |
| 229-341, gnl|fr1|chrUn (94958806-94958950) | |
| 229-341, gnl|galGal2|chr5 (20356713-20356578) | |
| 229-341, gnl|hg17|chr11 (47289840-47289993) | |
| 229-341, gnl|Hg17|chr11 (47289857-47289969) | |
| 229-341, gnl|loxAfr1|scaffold_29136 (13774-13926) | |
| 229-341, gnl|mm7|chr2 (91003301-91003148) | |
| 229-341, gnl|Mm7|chr2 (91003282-91003170) | |
| 229-341, gnl|monDom2|scaffold_33 (13174472-13174625) | |
| 229-341, gnl|oryCun1|scaffold_192945 (9564-9410) | |
| 229-341, gnl|panTro1|chr9 (47806630-47806783) | |
| 229-341, gnl|rheMac2|chr14 (24810402-24810249) | |
| 229-341, gnl|rn3|chr3 (75408718-75408565) | |
| 229-341, gnl|tetNig1|chr5 (11177654-11177782) | |
| 229-341, gnl|xenTro1|scaffold_922 (188814-188668) | |
| 448-612, gnl|bosTau2|chr15 (49000619-49000455) | |
| 448-612, gnl|canFam2|chr18 (45330736-45330538) | |
| 448-612, gnl|danRer3|chr7 (23310970-23310772) | |
| 448-612, gnl|dasNov1|scaffold_3175 (62654-62853) | |
| 448-612, gnl|echTel1|scaffold_323362 (51539-51342) | |
| 448-612, gnl|fr1|chrUn (94959163-94959357) | |
| 448-612, gnl|galGal2|chr5 (20355718-20355533) | |
| 448-612, gnl|hg17|chr11 (47301782-47301980) | |
| 448-612, gnl|Hg17|chr11 (47301796-47301960) | |
| 448-612, gnl|loxAfr1|scaffold_40430 (10198-10397) | |
| 448-612, gnl|mm7|chr2 (90994418-90994222) | |
| 448-612, gnl|Mm7|chr2 (90994404-90994240) | |
| 448-612, gnl|monDom2|scaffold_33 (13176646-13176842) | |
| 448-612, gnl|panTro1|chr9 (47818649-47818849) | |
| 448-612, gnl|rheMac2|chr14 (24797843-24797645) | |
| 448-612, gnl|rn3|chr3 (75400138-75399937) | |
| 448-612, gnl|tetNig1|chr5 (11178024-11178202) | |
| 448-612, gnl|xenTro1|scaffold_922 (187375-187179) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) |