Non-Coding RNA Search

Ss1.1-rfhi4025b_p5.5

Sequence:


               
               CACATCCGCCTGAGCTAATGTTTGATTTTGAAGGAAGACATCCCTCCACATTTGGCAGTC
TGCTACGTGGAAGGAGTATCCCAAGCCTCTCCAAGTTAACATCACTCTGTCTTGGAGTAA
AACTATTGAGCTCACAGACAACATAGTTATTACCTTTGAGTCCGGGCGTCCAGACCAGAT
GATCCTGGAGAAATCTCTTGATTATGGACGAACATGGCAGCCCTATCAGTATTATGCCAC
AGACTGCTTAGATGCTTTTCACATGGATCCTAAATCCGTGAAGGATTTATCACAGCATAC
AGTCTTAGAAATCATTTGCACGGAAGAGTACTCCACGGGGTATATGACCAATAGCAAAAT
AATCCACTTTGAAATCAAAGACAGGTTCGCGTTTTTTGCCGGACCTTGGCTACGCAATAT
GGCTTCCCTCTACGGCCAACTGGATACAACCAAGAAACTCAGAGATTTCTTTACGGTAAC
AGACCTGAGGATAAGGCTTTTGAGACCAGCCGTCGGGGAAATATTTGTAGATGAGCTACA
CTTGGCACGCTACTTTTATGCGATCTCCGACATAAAGGTGCATGGAAGGTGCAAATGTAA
TCTCCATGCCACTGTGTGTGTGTATGACAACAGCAAACTGACCTGTGAATGTGAGCACAA
CACTACAGGTCCAGACTGTGGGAAATGCAAGAAGAATTATCAGGGCCGACCTTGGAGTCC
AGGCTCCTACCTCCCCATCCCCAAAGGCACCGCAAATACCTGTATCCCCAGTATTTCCAG
TATTGGTAATCCTCCAAAGTTTAATAGGATATGGCCGAATATTTCTTCCCTTGAGGTTTC
TAACCCCAAACAAGTTGCTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATCCGCCTGAGCTAATGTTTGATTTTGAAGGAAGACATCCCTCCACATTTGGCAGTC
TGCTACGTGGAAGGAGTATCCCAAGCCTCTCCAAGTTAACATCACTCTGTCTTGGAGTAA
AACTATTGAGCTCACAGACAACATAGTTATTACCTTTGAGTCCGGGCGTCCAGACCAGAT
GATCCTGGAGAAATCTCTTGATTATGGACGAACATGGCAGCCCTATCAGTATTATGCCAC
AGACTGCTTAGATGCTTTTCACATGGATCCTAAATCCGTGAAGGATTTATCACAGCATAC
AGTCTTAGAAATCATTTGCACGGAAGAGTACTCCACGGGGTATATGACCAATAGCAAAAT
AATCCACTTTGAAATCAAAGACAGGTTCGCGTTTTTTGCCGGACCTTGGCTACGCAATAT
GGCTTCCCTCTACGGCCAACTGGATACAACCAAGAAACTCAGAGATTTCTTTACGGTAAC
AGACCTGAGGATAAGGCTTTTGAGACCAGCCGTCGGGGAAATATTTGTAGATGAGCTACA
CTTGGCACGCTACTTTTATGCGATCTCCGACATAAAGGTGCATGGAAGGTGCAAATGTAA
TCTCCATGCCACTGTGTGTGTGTATGACAACAGCAAACTGACCTGTGAATGTGAGCACAA
CACTACAGGTCCAGACTGTGGGAAATGCAAGAAGAATTATCAGGGCCGACCTTGGAGTCC
AGGCTCCTACCTCCCCATCCCCAAAGGCACCGCAAATACCTGTATCCCCAGTATTTCCAG
TATTGGTAATCCTCCAAAGTTTAATAGGATATGGCCGAATATTTCTTCCCTTGAGGTTTC
TAACCCCAAACAAGTTGCTCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55664952|emb|CAH73829.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55664952|emb|CAH73829.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-590, gnl|bosTau2|chr11 (82783002-82783593)
               

               
               3-590, gnl|Hg17|chr9 (132102961-132103552)
               

               
               3-590, gnl|Mm7|chr2 (29235478-29234887)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-590, gnl|bosTau2|chr11 (82783002-82783593)
               

               
               3-590, gnl|Hg17|chr9 (132102961-132103552)
               

               
               3-590, gnl|Mm7|chr2 (29235478-29234887)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ebs (0.118301)

	3-590, gnl\|bosTau2\|chr11 (82783002-82783593)
	3-590, gnl\|Hg17\|chr9 (132102961-132103552)
	3-590, gnl\|Mm7\|chr2 (29235478-29234887)