Ss1.1-rfhi4026b_a12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAAGCAGTGGTGAGGGCATGGAGGCACCTGCTTGGCCAAGATCTAAAACTCTAAAAG ATCTTTCTGCTATAAAATTGTGAACTCATGGGATATCCTTGTAAACACAGAGCCCAAGGC CAAAGAGCAAGCCAGACCCCCTAGCCCCATCTTGCTCCCTGCTCTGTCTCCCCCATGAAT GTCCAGCCAAGAATGCGGGTTGGGGGGCCTGGAAGCCCAGCCCCAAATGACAGCATTCCC ACTAGGATGGCAAAGAACAAAACTCCACACAGAAATGATAAGGGACCAGCGGACACACTG CCATAGCTGGCCCCAGGGCACCACCTGCAGAATCTGATCCCTAAGGATGGCTAGACGTAG TACAGTGGGGTATAAAAATTGAGATGGGATAAAAAGCAATGAGAATGTGGGCTGTGCCAC AAAAGAGCTGGACAGGACACCTCAAAACCATCAGGTCGTGGCAAACAAGAGACTGAGGAG CCATCCCAGCTCAGACTGACCAAATGCGGTGTGGGATCCTGGACCAGAAAAGGGATATCT GTGGAAAAACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAAGCAGTGGTGAGGGCATGGAGGCACCTGCTTGGCCAAGATCTAAAACTCTAAAAG ATCTTTCTGCTATAAAATTGTGAACTCATGGGATATCCTTGTAAACACAGAGCCCAAGGC CAAAGAGCAAGCCAGACCCCCTAGCCCCATCTTGCTCCCTGCTCTGTCTCCCCCATGAAT GTCCAGCCAAGAATGCGGGTTGGGGGGCCTGGAAGCCCAGCCCCAAATGACAGCATTCCC ACTAGGATGGCAAAGAACAAAACTCCACACAGAAATGATAAGGGACCAGCGGACACACTG CCATAGCTGGCCCCAGGGCACCACCTGCAGAATCTGATCCCTAAGGATGGCTAGACGTAG TACAGTGGGGTATAAAAATTGAGATGGGATAAAAAGCAATGAGAATGTGGGCTGTGCCAC AAAAGAGCTGGACAGGACACCTCAAAACCATCAGGTCGTGGCAAACAAGAGACTGAGGAG CCATCCCAGCTCAGACTGACCAAATGCGGTGTGGGATCCTGGACCAGAAAAGGGATATCT GTGGAAAAACTG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 83-302, + strand, RNAz p=0.990011 | |
| 388-526, - strand, RNAz p=0.864391 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 83-302, + strand, RNAz p=0.990011 | |
| 388-526, - strand, RNAz p=0.864391 |
| Aligned organism(s): 7 entry(ies) | More info |
| Aligned organism(s): 7 entry(ies) | Help | Less info |
| 18-302, gnl|bosTau2|chr7 (2324095-2323834) | |
| 18-302, gnl|Hg17|chr19 (18849309-18848947) | |
| 330-552, gnl|bosTau2|chr7 (2323832-2323613) | |
| 330-552, gnl|canFam2|chr20 (47228829-47228268) | |
| 330-552, gnl|hg17|chr19 (18848495-18849043) | |
| 330-552, gnl|Hg17|chr19 (18848945-18848683) | |
| 330-552, gnl|panTro1|chr20 (19920092-19920640) |
| Aligned organism(s): 7 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-302, gnl|bosTau2|chr7 (2324095-2323834) | |
| 18-302, gnl|Hg17|chr19 (18849309-18848947) | |
| 330-552, gnl|bosTau2|chr7 (2323832-2323613) | |
| 330-552, gnl|canFam2|chr20 (47228829-47228268) | |
| 330-552, gnl|hg17|chr19 (18848495-18849043) | |
| 330-552, gnl|Hg17|chr19 (18848945-18848683) | |
| 330-552, gnl|panTro1|chr20 (19920092-19920640) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| eru (0.120048) |