Non-Coding RNA Search

Ss1.1-rfhi4026b_h3.5

Sequence:


               
               CGGGCTGCAGGAATTCGGCCGAGGCTCCCATGCAGTTTTGAAAACAGCATCATCAGAGCT
CCTTGATCCCAAATATTATAATGAGACTCTTGAAACAGTGAATCTAGCGAAGTTTTATGG
TTTCATTGAAAGCAAATGTCTGCCTCTACTTGAAAAACAAATGTAACTCTTTTGAAGTAT
TAATATCCCTAGATCCTCATCAAAAGGGTGGCATTCACCTGGGGATTACTGTCTTGATTT
CTTAGGCATTGAAACTTTTCTCAATATGCTCTGTTATCTGAGTTTCATAAAACCCTTCCA
TCGGTTTCCATTTATTTTCAAGTATAAGTTTTCTCTGTGTTGACTGGTAGAAAACCATTC
TTCAAACTTTCTCCATGATCAAACTCCTTTTCTGATTTTTGGTAACGTATTTCTTTAAAA
AGTACATGATCTTATGAGAAAATTCATGAGATTAAAATTGAATGCAAATAAATTGCCATC
TGATAATTCCATATGAAATAATAGTCGACTGTAATAAGTAAAATAATTCATCCAATTAGA
GGAGAACAAGATGTATTTTACTGTGTATTTATATACCCTTTGCCACTTCATTCAGTACAT
TGTATAATGCATAATATTATTAGTAATGCATTCTTGGGATCTTTTATTTTGGAATGATGC
TAACTCTGTCTCTTTGCCAATTCTAATACCAGGTCCCAAGTAATAAATCTACAATACAAA
GAGAACTGAATATTCATTCTAGGGCTAAGATATGAACTTCACAATTCATTTAAGTACCTA
TTTTCATTGAATTTCCTTGAAAACAGTCTGTTCCTGGTGCCCAGTGCTAACTCAGTCGGG
ACCAGCATGATTAAAAGGAAGGGGAAAGCACAGTGAAATGCTAAGTTTCAGAAAAGTGAC
CTAAAGGACAGTTTGGTCCCAGGATGAAAAAAAGAAGATGTGGTTTGATCAAGTTGTATG
GATGATCTAAGCGGTCCACCCATTCTTCTCTTGTGGGAAGGAGTGGGGGCAGCCTGAGAA
GACCCTGTTTGGAAGAACACACCCATCTCTCTGGGACAGGGGTGGGGAACAGAAAGGGAG
GATGGAAAAGAAAACCATAAGAGATTTGACTGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGCAGGAATTCGGCCGAGGCTCCCATGCAGTTTTGAAAACAGCATCATCAGAGCT
CCTTGATCCCAAATATTATAATGAGACTCTTGAAACAGTGAATCTAGCGAAGTTTTATGG
TTTCATTGAAAGCAAATGTCTGCCTCTACTTGAAAAACAAATGTAACTCTTTTGAAGTAT
TAATATCCCTAGATCCTCATCAAAAGGGTGGCATTCACCTGGGGATTACTGTCTTGATTT
CTTAGGCATTGAAACTTTTCTCAATATGCTCTGTTATCTGAGTTTCATAAAACCCTTCCA
TCGGTTTCCATTTATTTTCAAGTATAAGTTTTCTCTGTGTTGACTGGTAGAAAACCATTC
TTCAAACTTTCTCCATGATCAAACTCCTTTTCTGATTTTTGGTAACGTATTTCTTTAAAA
AGTACATGATCTTATGAGAAAATTCATGAGATTAAAATTGAATGCAAATAAATTGCCATC
TGATAATTCCATATGAAATAATAGTCGACTGTAATAAGTAAAATAATTCATCCAATTAGA
GGAGAACAAGATGTATTTTACTGTGTATTTATATACCCTTTGCCACTTCATTCAGTACAT
TGTATAATGCATAATATTATTAGTAATGCATTCTTGGGATCTTTTATTTTGGAATGATGC
TAACTCTGTCTCTTTGCCAATTCTAATACCAGGTCCCAAGTAATAAATCTACAATACAAA
GAGAACTGAATATTCATTCTAGGGCTAAGATATGAACTTCACAATTCATTTAAGTACCTA
TTTTCATTGAATTTCCTTGAAAACAGTCTGTTCCTGGTGCCCAGTGCTAACTCAGTCGGG
ACCAGCATGATTAAAAGGAAGGGGAAAGCACAGTGAAATGCTAAGTTTCAGAAAAGTGAC
CTAAAGGACAGTTTGGTCCCAGGATGAAAAAAAGAAGATGTGGTTTGATCAAGTTGTATG
GATGATCTAAGCGGTCCACCCATTCTTCTCTTGTGGGAAGGAGTGGGGGCAGCCTGAGAA
GACCCTGTTTGGAAGAACACACCCATCTCTCTGGGACAGGGGTGGGGAACAGAAAGGGAG
GATGGAAAAGAAAACCATAAGAGATTTGACTGAAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               598-715, + strand, RNAz p=0.783229

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               598-715, + strand, RNAz p=0.783229

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-1116, gnl|bosTau2|chr29 (3066024-3067130)
               

               
               25-1116, gnl|Hg17|chr11 (87879439-87878340)
               

               
               25-1116, gnl|Mm7|chr7 (84070627-84071635)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-1116, gnl|bosTau2|chr29 (3066024-3067130)
               

               
               25-1116, gnl|Hg17|chr11 (87879439-87878340)
               

               
               25-1116, gnl|Mm7|chr7 (84070627-84071635)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.339155)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)

	25-1116, gnl\|bosTau2\|chr29 (3066024-3067130)
	25-1116, gnl\|Hg17\|chr11 (87879439-87878340)
	25-1116, gnl\|Mm7\|chr7 (84070627-84071635)