Non-Coding RNA Search

Ss1.1-rfhi4027b_h2.5

Sequence:


               
               TCGATGCTCTTTCGAGTCCAGCACCACTACAACTCTCACTATGAGAAGTTCGGCGACTTT
GTCTGGAGGAGTGAGGATGAGCTGGGGCCCAGGAAGGCCCACCTGATCCTGCGGCGGCTG
GAGAGGGTGAGCAGCCACTGTTCCAGCCTCCTGCGAAGCGCCCACATTCAGAGCCGCGTG
GACACCGTGCCCTACCTTTTCTGCCGCAGCGAGGAGGTCCGGCCTGCGGGTATGGTGTGG
TACAGCATCCTCAAGGACACCAAAATCACGTGCGAGGAGAAGATGGTGTCCATGGCCCGC
AACACGTATGGGGAGTCCAAGGGCCGGTGAGGGAGGGCGCTACCCTCCGTGAACACAGAG
ACTCTCCGTGGGAGGGGGAGCAGTGCTCTCGTGGCTCCTGGGGCCTGGGTGGGCTGGGGA
ATAGCTGAGGATGGGCCTGGCAGATGAGGCTTGCCAGCAAGGCCAAAGCAAACTCTTTCT
CTTGTGGATAGCCGACAGAGAACTTTGTAACCACTGGAATTATTCATTTTCCCCATCTTT
TATTTTTTCTAAGATGTCATTGACTCGATCAAAGTCTCTCCTTTTTAAACTTTTTCTTAT
GGATGACGGTCAATCCCGAGGCAGGAGCTTTCAGGTGGAGACCAAGCGGCCTTTCCTCTT
CTTCCTTCCTCCTGCCACACTCAGCTTCCCTCCTGCTGTGGACCCCGGGAGGAGACCTAT
GGAGAGACAACTGGACCTCTTCAGCATCAGGAAGGAGGCCCAGAAGATTGTTGCAGTGAG
GAAGCTTGGGTCTTTAGGACTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGATGCTCTTTCGAGTCCAGCACCACTACAACTCTCACTATGAGAAGTTCGGCGACTTT
GTCTGGAGGAGTGAGGATGAGCTGGGGCCCAGGAAGGCCCACCTGATCCTGCGGCGGCTG
GAGAGGGTGAGCAGCCACTGTTCCAGCCTCCTGCGAAGCGCCCACATTCAGAGCCGCGTG
GACACCGTGCCCTACCTTTTCTGCCGCAGCGAGGAGGTCCGGCCTGCGGGTATGGTGTGG
TACAGCATCCTCAAGGACACCAAAATCACGTGCGAGGAGAAGATGGTGTCCATGGCCCGC
AACACGTATGGGGAGTCCAAGGGCCGGTGAGGGAGGGCGCTACCCTCCGTGAACACAGAG
ACTCTCCGTGGGAGGGGGAGCAGTGCTCTCGTGGCTCCTGGGGCCTGGGTGGGCTGGGGA
ATAGCTGAGGATGGGCCTGGCAGATGAGGCTTGCCAGCAAGGCCAAAGCAAACTCTTTCT
CTTGTGGATAGCCGACAGAGAACTTTGTAACCACTGGAATTATTCATTTTCCCCATCTTT
TATTTTTTCTAAGATGTCATTGACTCGATCAAAGTCTCTCCTTTTTAAACTTTTTCTTAT
GGATGACGGTCAATCCCGAGGCAGGAGCTTTCAGGTGGAGACCAAGCGGCCTTTCCTCTT
CTTCCTTCCTCCTGCCACACTCAGCTTCCCTCCTGCTGTGGACCCCGGGAGGAGACCTAT
GGAGAGACAACTGGACCTCTTCAGCATCAGGAAGGAGGCCCAGAAGATTGTTGCAGTGAG
GAAGCTTGGGTCTTTAGGACTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61877467|ref|XP_608775.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61877467|ref|XP_608775.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               209-408, - strand, RNAz p=0.840447
               

               
               681-772, - strand, RNAz p=0.94023

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-408, - strand, RNAz p=0.840447
               

               
               681-772, - strand, RNAz p=0.94023

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               89-803, gnl|bosTau2|chr8 (56720096-56719378)
               

               
               89-803, gnl|Hg17|chr9 (116267925-116267180)
               

               
               89-803, gnl|Mm7|chr4 (64815389-64814601)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-803, gnl|bosTau2|chr8 (56720096-56719378)
               

               
               89-803, gnl|Hg17|chr9 (116267925-116267180)
               

               
               89-803, gnl|Mm7|chr4 (64815389-64814601)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fhi (0.339155)
               

               
               ebs (0.236602)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               ebs (0.236602)
               

               
               hyp (0.142837)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	209-408, - strand, RNAz p=0.840447
	681-772, - strand, RNAz p=0.94023

	89-803, gnl\|bosTau2\|chr8 (56720096-56719378)
	89-803, gnl\|Hg17\|chr9 (116267925-116267180)
	89-803, gnl\|Mm7\|chr4 (64815389-64814601)

	fhi (0.339155)
	ebs (0.236602)
	hyp (0.142837)
	cly (0.120642)
	pgl (0.118483)