Ss1.1-rfhi4028b_c22.5
|
GGCTGGCAAGAAGGATGGAAAGCGCCAGGGTTCCAAGGAGGCCCCCAGGAAGAGTGGGAG
CCCCCCCTCCTCCTCAGAGGGGCAGAAGCATCCTCGGTGGAAGGAAGGGGCTAAAGACAG
GCCCGACCCCCTGTCACCCTGGGCAGAGCTGTCGAGGCACAAGTACCGGGCCCCCCAGGG
CTGCTCGGGTGTGCAGGAGTGTGCTCGGCAGGAGGGCCTAGCCTTCTTTGGCACCGAGCT
TGCCCCAGTGCGACAACAGGAGCTGGCCTCTCTGCTGAGGACGTACCTGGAGCGGCTGCC
TTGGGCTGGGCAGCTGACCAAGGAGCTGCCCCTCTCTCCTGCTTACTTTGGTGAGGATGG
CATCTTCCGCCACGACCGCCTCCGCTTCCGGGACTTTGTGGATGCTTTGGAGGACAGCCT
GGAGGAGGTGGCAGTGAGACAGACAGGTGATGATGATGAGGTGGATGACTTTGAGGACTT
CATCTTCAGCCACTTCTTTGGAGACAAAGCCCTAAAGAAGAGGTCTGGGAAGAAGGACAA
ACATTTGCGGAACCCCAGAGTTGTGGGGCCCAGGGAGGAGCACAGCCACCACCGCCGAGG
CTGAGGCCCCCTGTGTTATCTGTCCTCTGGGAACCGTTAAACTGCCACCTCCCCCAGCTG
CCCTGGCTCTTTCGGTGTCCTTGGATCTCCTTCACAGAGGAGAGCAAAGAAATCACCCAG
CCCTGCACGGATACCACTTTCGCTAAGGAAAAAACCTTAGCTGGACCGGCCTTGCTGTCT
ATGCAAATGCATGCAAATGCTCAGGGCCCTGGGCCTGGACTCTTGCAGCCTGATTGTGTG
AAGTGGGGGGTGGGGGTAGAGGAGTGGGGGCGATTCTGATTCTGAAGCCAAAGAGCTTTC
CTCCTCCTGTGTGTGTGTGTGGGGGGGGGCAGCCCAGAGTGGGCCCCTTGGCTGTACCCA
TTGACCTGTGCCCCCTGGGACTTGACTCGCCTTGCTGGCTGGAGGCCCAGCATCAGGGCT
TCCCCTGGGGTTTTGTGAGATTTGGAAAGAGCTCTCCCCTGGGGGAAGAAGTCCCCCTTT
TGGCCCAGTTCTTCACGTGGCCTCACCTCCCCATGTGAACTGTAGACTCAGATCCCAGTA
AAATGCTCTTGGAGCTGTGACACTGTGTGTGGGCGCCGTCACTTGGGACACCAACGCCCA
CCACCTCGTAGGCACTGGTACTCACCTCCCATATACTCCTCTCCCTGTCACCTCCCCCTC
TCTGCAAGCCTCAGGCCCTCTGGGCTGGAACTCTGCATTTTGCTCACAGCTGCCTTGGCT
GCACCCCTGGGAGATGTAGACATAGCGACGTAGCAACATAGCGAGTGGGTTTTGGAGTCT
GAGCCTCTGGCTCAAGTCCAGGCTGAGTGATTGTGGGCAAGTTAATCTCTGGGAGCCTTG
GGTTTCTACTCCTCAAAAAAGGAGATTGAGGGGCTGGGGGAAGAGATTAAATAAAACAAC
ATAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTGGCAAGAAGGATGGAAAGCGCCAGGGTTCCAAGGAGGCCCCCAGGAAGAGTGGGAG
CCCCCCCTCCTCCTCAGAGGGGCAGAAGCATCCTCGGTGGAAGGAAGGGGCTAAAGACAG
GCCCGACCCCCTGTCACCCTGGGCAGAGCTGTCGAGGCACAAGTACCGGGCCCCCCAGGG
CTGCTCGGGTGTGCAGGAGTGTGCTCGGCAGGAGGGCCTAGCCTTCTTTGGCACCGAGCT
TGCCCCAGTGCGACAACAGGAGCTGGCCTCTCTGCTGAGGACGTACCTGGAGCGGCTGCC
TTGGGCTGGGCAGCTGACCAAGGAGCTGCCCCTCTCTCCTGCTTACTTTGGTGAGGATGG
CATCTTCCGCCACGACCGCCTCCGCTTCCGGGACTTTGTGGATGCTTTGGAGGACAGCCT
GGAGGAGGTGGCAGTGAGACAGACAGGTGATGATGATGAGGTGGATGACTTTGAGGACTT
CATCTTCAGCCACTTCTTTGGAGACAAAGCCCTAAAGAAGAGGTCTGGGAAGAAGGACAA
ACATTTGCGGAACCCCAGAGTTGTGGGGCCCAGGGAGGAGCACAGCCACCACCGCCGAGG
CTGAGGCCCCCTGTGTTATCTGTCCTCTGGGAACCGTTAAACTGCCACCTCCCCCAGCTG
CCCTGGCTCTTTCGGTGTCCTTGGATCTCCTTCACAGAGGAGAGCAAAGAAATCACCCAG
CCCTGCACGGATACCACTTTCGCTAAGGAAAAAACCTTAGCTGGACCGGCCTTGCTGTCT
ATGCAAATGCATGCAAATGCTCAGGGCCCTGGGCCTGGACTCTTGCAGCCTGATTGTGTG
AAGTGGGGGGTGGGGGTAGAGGAGTGGGGGCGATTCTGATTCTGAAGCCAAAGAGCTTTC
CTCCTCCTGTGTGTGTGTGTGGGGGGGGGCAGCCCAGAGTGGGCCCCTTGGCTGTACCCA
TTGACCTGTGCCCCCTGGGACTTGACTCGCCTTGCTGGCTGGAGGCCCAGCATCAGGGCT
TCCCCTGGGGTTTTGTGAGATTTGGAAAGAGCTCTCCCCTGGGGGAAGAAGTCCCCCTTT
TGGCCCAGTTCTTCACGTGGCCTCACCTCCCCATGTGAACTGTAGACTCAGATCCCAGTA
AAATGCTCTTGGAGCTGTGACACTGTGTGTGGGCGCCGTCACTTGGGACACCAACGCCCA
CCACCTCGTAGGCACTGGTACTCACCTCCCATATACTCCTCTCCCTGTCACCTCCCCCTC
TCTGCAAGCCTCAGGCCCTCTGGGCTGGAACTCTGCATTTTGCTCACAGCTGCCTTGGCT
GCACCCCTGGGAGATGTAGACATAGCGACGTAGCAACATAGCGAGTGGGTTTTGGAGTCT
GAGCCTCTGGCTCAAGTCCAGGCTGAGTGATTGTGGGCAAGTTAATCTCTGGGAGCCTTG
GGTTTCTACTCCTCAAAAAAGGAGATTGAGGGGCTGGGGGAAGAGATTAAATAAAACAAC
ATAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
|
gi|55593396|ref|XP_514433.1| |
Protein identifier
|
gi|55593396|ref|XP_514433.1| |
|
1-159, - strand, RNAz p=0.976204 |
|
200-519, + strand, RNAz p=0.718117 |
|
848-1113, - strand, RNAz p=0.977704 |
|
1034-1129, - strand, RNAz p=0.71941 |
|
1226-1344, - strand, RNAz p=0.977494 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-159, - strand, RNAz p=0.976204 |
|
200-519, + strand, RNAz p=0.718117 |
|
848-1113, - strand, RNAz p=0.977704 |
|
1034-1129, - strand, RNAz p=0.71941 |
|
1226-1344, - strand, RNAz p=0.977494 |
Human gene identifier and UTR site,
human gene reading direction
|
1-524, gnl|bosTau2|chr3 (9034572-9034049) |
|
1-524, gnl|Hg17|chr1 (151731642-151731119) |
|
1-524, gnl|Mm7|chr3 (89574421-89574932) |
| |
|
848-1344, gnl|bosTau2|chr3 (9033138-9032620) |
|
848-1344, gnl|canFam2|chr7 (45498960-45498410) |
|
848-1344, gnl|dasNov1|scaffold_187861 (4694-4085) |
|
848-1344, gnl|echTel1|scaffold_310676 (36398-35853) |
|
848-1344, gnl|hg17|chr1 (151729642-151730240) |
|
848-1344, gnl|loxAfr1|scaffold_67020 (26331-25747) |
|
848-1344, gnl|mm7|chr3 (89576240-89575784) |
|
848-1344, gnl|oryCun1|scaffold_196054 (26065-25493) |
|
848-1344, gnl|panTro1|chr1_random (24800449-24801048) |
|
848-1344, gnl|rheMac2|chr1 (133488092-133488685) |
|
848-1344, gnl|rn3|chr2 (181597850-181597406) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-524, gnl|bosTau2|chr3 (9034572-9034049) |
|
1-524, gnl|Hg17|chr1 (151731642-151731119) |
|
1-524, gnl|Mm7|chr3 (89574421-89574932) |
| |
|
848-1344, gnl|bosTau2|chr3 (9033138-9032620) |
|
848-1344, gnl|canFam2|chr7 (45498960-45498410) |
|
848-1344, gnl|dasNov1|scaffold_187861 (4694-4085) |
|
848-1344, gnl|echTel1|scaffold_310676 (36398-35853) |
|
848-1344, gnl|hg17|chr1 (151729642-151730240) |
|
848-1344, gnl|loxAfr1|scaffold_67020 (26331-25747) |
|
848-1344, gnl|mm7|chr3 (89576240-89575784) |
|
848-1344, gnl|oryCun1|scaffold_196054 (26065-25493) |
|
848-1344, gnl|panTro1|chr1_random (24800449-24801048) |
|
848-1344, gnl|rheMac2|chr1 (133488092-133488685) |
|
848-1344, gnl|rn3|chr2 (181597850-181597406) |
|
mas (0.630915) |
|
nms (0.427716) |
|
amn (0.417711) |
|
cmu (0.372787) |
|
eru (0.360144) |
|
fhi (0.339155) |
|
pla (0.267344) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
nco (0.161734) |
|
eli (0.151814) |
|
cst (0.140036) |
|
cbr (0.127975) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
mas (0.630915) |
|
nms (0.427716) |
|
amn (0.417711) |
|
cmu (0.372787) |
|
eru (0.360144) |
|
fhi (0.339155) |
|
pla (0.267344) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
nco (0.161734) |
|
eli (0.151814) |
|
cst (0.140036) |
|
cbr (0.127975) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
med (0.116252) |
|
jca (0.11396) |
|
cty (0.10408) |
|
ldo (0.0970026) |
