Ss1.1-rfhi4028b_f10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCCCCTCAGCCACATTGCTGCCCAGATCTACGACTTATGGACGGGCATCCAGTGGGG AGCCCAGGTCTGCTTTGCCGAGCCGGATGCCCTAAAGGGGAGCCTGGTGAACACACTTCG GGAGGTGGAGCCCACATCCCACATGGGGGTGCCTCGGGTGTGGGAGAAAATCATGGAGCG GATCCAGGAGGTGGCTGCTCAGTCTGGCTTCATCCGGCGCAAGATGCTGCTGTGGGCCAT GTCGGTGACCTTGGAGCAGAACCTCACCTGCCCGAGCAGTGATCTGAAGCCCTTCACCAC CCGACTGGCAGATTACCTGGTTCTAGCCAAGGTCCGCCAGGCACTGGGCTTTGCCAAGTG TCAGAAAAACTTCTATGGAGCTGCTCCCATGACTGCAGAGACACAGCACTTCTTCCTGGG CCTCAACATCCGCTTGTATGCAGGCTACGGCCTCAGTGAGACCTCAGGCCCCCACTTCAT GTCCAGCCCTAACAACTACCGGCTCTACAGCTCCGGCAAGGTGGTGCCAGGCTGCCGGGT GAAGCTGGTGAATGAGGACGCAGAGGGCACAGGGGAGATCTGCCTGTGGGGCCGCACCAT CTTCATGGGCTACCTGAACATGGAGGACAAGACGCGCGAGGCCATCGACAAGGACGGCTG GCTGCACACAGGCGACGTGGGCCGCCTGGATGCCGACGGCTTCCTCTACATCACTGGGCG TCTCAAAGAATTGATCATCACAGCTGGTGGAGAGAACGTGCCCCCTGTGCCCATAGAGGA GGCTGTGAAGATGGAGCTGCCCATCATCAGCAACGCCATGCTGATCGGGGACCAGAGGAA GTTCCTGTCCATGCTGCTTACCTTGAAGTGCACTCTGGACCCCGACACCTCTGACCCCAC CGATAACCTGACCGAACAAGCGGTAGAGTTTTGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCCCCTCAGCCACATTGCTGCCCAGATCTACGACTTATGGACGGGCATCCAGTGGGG AGCCCAGGTCTGCTTTGCCGAGCCGGATGCCCTAAAGGGGAGCCTGGTGAACACACTTCG GGAGGTGGAGCCCACATCCCACATGGGGGTGCCTCGGGTGTGGGAGAAAATCATGGAGCG GATCCAGGAGGTGGCTGCTCAGTCTGGCTTCATCCGGCGCAAGATGCTGCTGTGGGCCAT GTCGGTGACCTTGGAGCAGAACCTCACCTGCCCGAGCAGTGATCTGAAGCCCTTCACCAC CCGACTGGCAGATTACCTGGTTCTAGCCAAGGTCCGCCAGGCACTGGGCTTTGCCAAGTG TCAGAAAAACTTCTATGGAGCTGCTCCCATGACTGCAGAGACACAGCACTTCTTCCTGGG CCTCAACATCCGCTTGTATGCAGGCTACGGCCTCAGTGAGACCTCAGGCCCCCACTTCAT GTCCAGCCCTAACAACTACCGGCTCTACAGCTCCGGCAAGGTGGTGCCAGGCTGCCGGGT GAAGCTGGTGAATGAGGACGCAGAGGGCACAGGGGAGATCTGCCTGTGGGGCCGCACCAT CTTCATGGGCTACCTGAACATGGAGGACAAGACGCGCGAGGCCATCGACAAGGACGGCTG GCTGCACACAGGCGACGTGGGCCGCCTGGATGCCGACGGCTTCCTCTACATCACTGGGCG TCTCAAAGAATTGATCATCACAGCTGGTGGAGAGAACGTGCCCCCTGTGCCCATAGAGGA GGCTGTGAAGATGGAGCTGCCCATCATCAGCAACGCCATGCTGATCGGGGACCAGAGGAA GTTCCTGTCCATGCTGCTTACCTTGAAGTGCACTCTGGACCCCGACACCTCTGACCCCAC CGATAACCTGACCGAACAAGCGGTAGAGTTTTGCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr21 (1225159-1225054) | |
| 1-106, gnl|canFam2|chr3 (61192987-61193050) | |
| 1-106, gnl|danRer3|chr25 (20334493-20334429) | |
| 1-106, gnl|dasNov1|scaffold_34738 (3428-3363) | |
| 1-106, gnl|echTel1|scaffold_268650 (4922-4857) | |
| 1-106, gnl|fr1|chrUn (229561582-229561643) | |
| 1-106, gnl|galGal2|chr10 (4557685-4557622) | |
| 1-106, gnl|hg17|chr15 (76261358-76261423) | |
| 1-106, gnl|Hg17|chr15 (76261462-76261357) | |
| 1-106, gnl|loxAfr1|scaffold_3327 (36140-36205) | |
| 1-106, gnl|mm7|chr9 (54651184-54651249) | |
| 1-106, gnl|Mm7|chr9 (54651288-54651183) | |
| 1-106, gnl|monDom2|scaffold_41 (16614101-16614166) | |
| 1-106, gnl|oryCun1|scaffold_145788 (14311-14253) | |
| 1-106, gnl|panTro1|chr16 (76917181-76917246) | |
| 1-106, gnl|rheMac2|chr19 (6077187-6077122) | |
| 1-106, gnl|rn3|chr8 (58194599-58194664) | |
| 1-106, gnl|tetNig1|chr12 (5167584-5167642) | |
| 1-106, gnl|xenTro1|scaffold_62 (1602768-1602832) | |
| 272-510, gnl|bosTau2|chr21 (1223050-1222812) | |
| 272-510, gnl|Hg17|chr15 (76259185-76258947) | |
| 272-510, gnl|Mm7|chr9 (54645431-54645193) | |
| 727-868, gnl|bosTau2|chr21 (1220842-1220701) | |
| 727-868, gnl|canFam2|chr3 (61186262-61186411) | |
| 727-868, gnl|danRer3|chr25 (20349624-20349477) | |
| 727-868, gnl|dasNov1|scaffold_34738 (10558-10409) | |
| 727-868, gnl|echTel1|scaffold_284101 (52506-52357) | |
| 727-868, gnl|fr1|chrUn (229560460-229560608) | |
| 727-868, gnl|galGal2|chr10 (4562890-4562741) | |
| 727-868, gnl|hg17|chr15 (76253777-76253926) | |
| 727-868, gnl|Hg17|chr15 (76253923-76253782) | |
| 727-868, gnl|loxAfr1|scaffold_48495 (10941-11090) | |
| 727-868, gnl|mm7|chr9 (54639016-54639165) | |
| 727-868, gnl|Mm7|chr9 (54639162-54639021) | |
| 727-868, gnl|monDom2|scaffold_41 (16607603-16607757) | |
| 727-868, gnl|oryCun1|scaffold_178219 (11529-11697) | |
| 727-868, gnl|panTro1|chr16 (76909625-76909774) | |
| 727-868, gnl|rheMac2|chr7 (57209409-57209558) | |
| 727-868, gnl|rn3|chr8 (58181332-58181481) | |
| 727-868, gnl|tetNig1|chr12 (5166323-5166468) | |
| 727-868, gnl|xenTro1|scaffold_62 (1592176-1592319) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr21 (1225159-1225054) | |
| 1-106, gnl|canFam2|chr3 (61192987-61193050) | |
| 1-106, gnl|danRer3|chr25 (20334493-20334429) | |
| 1-106, gnl|dasNov1|scaffold_34738 (3428-3363) | |
| 1-106, gnl|echTel1|scaffold_268650 (4922-4857) | |
| 1-106, gnl|fr1|chrUn (229561582-229561643) | |
| 1-106, gnl|galGal2|chr10 (4557685-4557622) | |
| 1-106, gnl|hg17|chr15 (76261358-76261423) | |
| 1-106, gnl|Hg17|chr15 (76261462-76261357) | |
| 1-106, gnl|loxAfr1|scaffold_3327 (36140-36205) | |
| 1-106, gnl|mm7|chr9 (54651184-54651249) | |
| 1-106, gnl|Mm7|chr9 (54651288-54651183) | |
| 1-106, gnl|monDom2|scaffold_41 (16614101-16614166) | |
| 1-106, gnl|oryCun1|scaffold_145788 (14311-14253) | |
| 1-106, gnl|panTro1|chr16 (76917181-76917246) | |
| 1-106, gnl|rheMac2|chr19 (6077187-6077122) | |
| 1-106, gnl|rn3|chr8 (58194599-58194664) | |
| 1-106, gnl|tetNig1|chr12 (5167584-5167642) | |
| 1-106, gnl|xenTro1|scaffold_62 (1602768-1602832) | |
| 272-510, gnl|bosTau2|chr21 (1223050-1222812) | |
| 272-510, gnl|Hg17|chr15 (76259185-76258947) | |
| 272-510, gnl|Mm7|chr9 (54645431-54645193) | |
| 727-868, gnl|bosTau2|chr21 (1220842-1220701) | |
| 727-868, gnl|canFam2|chr3 (61186262-61186411) | |
| 727-868, gnl|danRer3|chr25 (20349624-20349477) | |
| 727-868, gnl|dasNov1|scaffold_34738 (10558-10409) | |
| 727-868, gnl|echTel1|scaffold_284101 (52506-52357) | |
| 727-868, gnl|fr1|chrUn (229560460-229560608) | |
| 727-868, gnl|galGal2|chr10 (4562890-4562741) | |
| 727-868, gnl|hg17|chr15 (76253777-76253926) | |
| 727-868, gnl|Hg17|chr15 (76253923-76253782) | |
| 727-868, gnl|loxAfr1|scaffold_48495 (10941-11090) | |
| 727-868, gnl|mm7|chr9 (54639016-54639165) | |
| 727-868, gnl|Mm7|chr9 (54639162-54639021) | |
| 727-868, gnl|monDom2|scaffold_41 (16607603-16607757) | |
| 727-868, gnl|oryCun1|scaffold_178219 (11529-11697) | |
| 727-868, gnl|panTro1|chr16 (76909625-76909774) | |
| 727-868, gnl|rheMac2|chr7 (57209409-57209558) | |
| 727-868, gnl|rn3|chr8 (58181332-58181481) | |
| 727-868, gnl|tetNig1|chr12 (5166323-5166468) | |
| 727-868, gnl|xenTro1|scaffold_62 (1592176-1592319) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| fhi (0.169578) | |
| hyp (0.142837) |