Non-Coding RNA Search

Ss1.1-rfhi4028b_p17.5

Sequence:


               
               GGAAGCTGATGAATATATTGACATTGGAGCCCTCAATGGCATCTTTGTGCTGGGAAGGAG
TATGGGCTTCATTGGACACTATCTTGATCAGAAAAGGCTGAAGCAGGGGCTGTATCGTCA
CCCTTGGGATGATATTTCATATGTTCTTCCGGAACACATGAGCATGTAAACGGAGCCAGG
AACCCTGTTACAGTAAAGTGAAGACAAGAACTCCTCCCCTGGGAAACAGCCGCAGACAGC
TGGCACTGGCGCTTACTTAAAGGACGGACCTAGAATGTCAACAGCTGCTGGTGTACAGGC
ACCGAAAACAATACCCACAGGCTAACACTGTTCAGTCTACACAAAGAAGCTTGATTTTTT
TTCTTTTTAAATAAACATAGAAGTAAGAACCCAGTCAATGATTGTGACATTTGCTCTGCT
ACCTGCTATATTTATTATATGGAAGCATCTAAGCACTGGCAGGAGAGTGTTTTGCTCCTG
TAGGGCATAATGATATTGCTTTCTTTTTTGCATTAGTTAAAATGTTTTTTCCCTTGGAGG
AAAGGAATGACGTTTTTAAGATCTCAAGATACTCTCCATTTAAAAGGCCTCGAATGTCTT
GTTTTTCCATTGTGTTTTTCTTCCTCCTCATATAACCTGAAGAACATTGTATTAATCTGA
TTTTTTTTAAAGGATCTTTTTGTATGTTGTGTGTTAAAAGAGTTTGGTATCCCCCTGAAA
TGTTCTGTACTGCCGACCAGTGTCTCTTTGTGTCAGGGGGTCGGGACCATTGCACCCTTT
GCCATTGTTATAAAATATGCAGAGCAGTAATTTAAAATGTAAAGTTGTAACATACATATG
TTTAAAACAGAAGTGCAAAGCAAAAAGCTGTGAAATGTCTTGTCTTACATTCTCTGTATT
TATGCAGCTGACTTGTCTGTCTGTTACTGACTAGTCTCCAGCCAGTTTGCATCTGTAATC
CACAAAGAGTCTGGACAGCTGCCACCTCAGTCTCTCCTCTGCATTATCATAGTTTGGTTT
AAATAAACTATATCATAACAATGAAGGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCTGATGAATATATTGACATTGGAGCCCTCAATGGCATCTTTGTGCTGGGAAGGAG
TATGGGCTTCATTGGACACTATCTTGATCAGAAAAGGCTGAAGCAGGGGCTGTATCGTCA
CCCTTGGGATGATATTTCATATGTTCTTCCGGAACACATGAGCATGTAAACGGAGCCAGG
AACCCTGTTACAGTAAAGTGAAGACAAGAACTCCTCCCCTGGGAAACAGCCGCAGACAGC
TGGCACTGGCGCTTACTTAAAGGACGGACCTAGAATGTCAACAGCTGCTGGTGTACAGGC
ACCGAAAACAATACCCACAGGCTAACACTGTTCAGTCTACACAAAGAAGCTTGATTTTTT
TTCTTTTTAAATAAACATAGAAGTAAGAACCCAGTCAATGATTGTGACATTTGCTCTGCT
ACCTGCTATATTTATTATATGGAAGCATCTAAGCACTGGCAGGAGAGTGTTTTGCTCCTG
TAGGGCATAATGATATTGCTTTCTTTTTTGCATTAGTTAAAATGTTTTTTCCCTTGGAGG
AAAGGAATGACGTTTTTAAGATCTCAAGATACTCTCCATTTAAAAGGCCTCGAATGTCTT
GTTTTTCCATTGTGTTTTTCTTCCTCCTCATATAACCTGAAGAACATTGTATTAATCTGA
TTTTTTTTAAAGGATCTTTTTGTATGTTGTGTGTTAAAAGAGTTTGGTATCCCCCTGAAA
TGTTCTGTACTGCCGACCAGTGTCTCTTTGTGTCAGGGGGTCGGGACCATTGCACCCTTT
GCCATTGTTATAAAATATGCAGAGCAGTAATTTAAAATGTAAAGTTGTAACATACATATG
TTTAAAACAGAAGTGCAAAGCAAAAAGCTGTGAAATGTCTTGTCTTACATTCTCTGTATT
TATGCAGCTGACTTGTCTGTCTGTTACTGACTAGTCTCCAGCCAGTTTGCATCTGTAATC
CACAAAGAGTCTGGACAGCTGCCACCTCAGTCTCTCCTCTGCATTATCATAGTTTGGTTT
AAATAAACTATATCATAACAATGAAGGCAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               113-230, - strand, RNAz p=0.649189

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-230, - strand, RNAz p=0.649189

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               74-1044, gnl|bosTau2|chr23 (107536-108516)
               

               
               74-1044, gnl|Hg17|chr17 (37277684-37276695)
               

               
               74-1044, gnl|Mm7|chr11 (100586378-100585392)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-1044, gnl|bosTau2|chr23 (107536-108516)
               

               
               74-1044, gnl|Hg17|chr17 (37277684-37276695)
               

               
               74-1044, gnl|Mm7|chr11 (100586378-100585392)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               eye (0.341006)
               

               
               nca (0.273748)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               nca (0.273748)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	74-1044, gnl\|bosTau2\|chr23 (107536-108516)
	74-1044, gnl\|Hg17\|chr17 (37277684-37276695)
	74-1044, gnl\|Mm7\|chr11 (100586378-100585392)

	eye (0.341006)
	nca (0.273748)
	fbs (0.175346)
	fhi (0.169578)
	fat (0.147427)
	ste (0.135208)
	kid (0.129735)
	pgl (0.118483)
	med (0.116252)