Non-Coding RNA Search

Ss1.1-rfhi4029b_a24.5

Sequence:


               
               TTTGAGTCGTGCCTAGGTGTTAAGTCAATGCTTCACTGCAAATAAGTTGAAGGGGGCAAA
GTCCTGACACTTTATACACATGTTGAGGGGCAAGTTTAAGAGACTGAACAGTTTACATTA
AGCTGTTTTCAGTTTCTGTTATTAGAATACATGTGCTTAAGCAAATAGAAACTGTCCGAA
CCAGTGTTTCTTATAGCATCAGGCCGTTGCAGTTACAATCCATTTTGCAGTCTTTTCAAG
TAAGAAAAGCTAGTCTTTATTTTCTACAGTGTAGGCTTAATTTTAGAACATATATCAATG
ATATTTTTAAGTAGTAGTTTTAAAAATATTTCTATGTAGATGCTGTTTTAATTTGGGATT
TTTTTTTCTTGTAACAGGTGCTATATGTAAATATAAAAGGCAAAAAGTCATTTAGTTAAA
AGTCTAGTTTATTTCCTAATTAAATTATAATTTTACATATCTGCTACCATTTCACGTTTG
ATTATACTGAACTAGTAGCAAAACAGAATTAGCCCCTTAATTTTTTTAATTCTCTTCCCC
CACTTCACAAAAATATCTCCATGTTGCTTCCCATGATTAGGAGACAAGCTTAGGGTTCAT
TTAAAATGTGTCAGCGTGAATGTGTTCAACACTGGATAATTTGAAATCATCATTATGTAT
TTGTCACTGCAGCTTACTATGCTTGAAAGGCCTTGTGGATTTGTCTTAATTCCAGCTAAA
AATTATAATTCCTGCAATTTCATGTAAAAGAAAATCTATGACTACTAACAGCAAACAAGA
TAAAAATGTTGGTTTGCATTAAAACTGTTTTAGTCCTAAGAGCAATTTATGTTATGTGAA
ATGCTATTATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGTCGTGCCTAGGTGTTAAGTCAATGCTTCACTGCAAATAAGTTGAAGGGGGCAAA
GTCCTGACACTTTATACACATGTTGAGGGGCAAGTTTAAGAGACTGAACAGTTTACATTA
AGCTGTTTTCAGTTTCTGTTATTAGAATACATGTGCTTAAGCAAATAGAAACTGTCCGAA
CCAGTGTTTCTTATAGCATCAGGCCGTTGCAGTTACAATCCATTTTGCAGTCTTTTCAAG
TAAGAAAAGCTAGTCTTTATTTTCTACAGTGTAGGCTTAATTTTAGAACATATATCAATG
ATATTTTTAAGTAGTAGTTTTAAAAATATTTCTATGTAGATGCTGTTTTAATTTGGGATT
TTTTTTTCTTGTAACAGGTGCTATATGTAAATATAAAAGGCAAAAAGTCATTTAGTTAAA
AGTCTAGTTTATTTCCTAATTAAATTATAATTTTACATATCTGCTACCATTTCACGTTTG
ATTATACTGAACTAGTAGCAAAACAGAATTAGCCCCTTAATTTTTTTAATTCTCTTCCCC
CACTTCACAAAAATATCTCCATGTTGCTTCCCATGATTAGGAGACAAGCTTAGGGTTCAT
TTAAAATGTGTCAGCGTGAATGTGTTCAACACTGGATAATTTGAAATCATCATTATGTAT
TTGTCACTGCAGCTTACTATGCTTGAAAGGCCTTGTGGATTTGTCTTAATTCCAGCTAAA
AATTATAATTCCTGCAATTTCATGTAAAAGAAAATCTATGACTACTAACAGCAAACAAGA
TAAAAATGTTGGTTTGCATTAAAACTGTTTTAGTCCTAAGAGCAATTTATGTTATGTGAA
ATGCTATTATAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-844, gnl|bosTau2|chr2 (43800717-43799870)
               

               
               1-844, gnl|Hg17|chr2 (120457726-120458576)
               

               
               1-844, gnl|Mm7|chr1 (119513953-119513119)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-844, gnl|bosTau2|chr2 (43800717-43799870)
               

               
               1-844, gnl|Hg17|chr2 (120457726-120458576)
               

               
               1-844, gnl|Mm7|chr1 (119513953-119513119)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sag (0.36543)
               

               
               ret (0.257467)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               ret (0.257467)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	1-844, gnl\|bosTau2\|chr2 (43800717-43799870)
	1-844, gnl\|Hg17\|chr2 (120457726-120458576)
	1-844, gnl\|Mm7\|chr1 (119513953-119513119)

	sag (0.36543)
	ret (0.257467)
	fhi (0.169578)
	kid (0.129735)
	tra (0.123092)
	ebs (0.118301)