Non-Coding RNA Search

Ss1.1-rfhi4029b_m24.5

Sequence:


               
               TTGTGTGCCCAGCAGTGGCGGTGCAGGAGCCCCTCCTGGGCTATTTTCTGTACTCAGCTC
AGAGCTGAGGGAGAGGGTGGAGGGGATCCATCTTTCTTCAGGCTCCACTATGGTCCATTC
CAGAAGTCATTCAAACTTGTTTTAAGCTGGCTGATTTGCTTATTGGCTTCAAAAGTTGGA
ATTGAAGGGTGAAGGATGCAGGCAACAGATCCTTCCCCCACTCCTCCTCCACCCCTCCGA
TCCTTCTACTCAGGAGGCCCGGGGGGTGGGGGGAAGTGGAGCCAAACCCTAACCCAAAAG
GTATTGAGGCTCACTGTTCTTCCAGACTTAGTCTACTTTACTTGTGACTCAGAAGCCCTT
TCCCTACCCAGCAAGACCACACTCTCTTGCTTCCTTCTCTTTTCTCTTTTTGTACCTGTA
AACAATATATTGTCATATCTATTCAATGCTTGTGCCCACCTCAGGGCTCTGTTCTTGCTG
TTCATTCTGCCTTGATGTTCTGGCCCAAGATCTTTGCTCTAATGCCTTAAGCTCCATTAT
CATCTCAGAGAGGCTTTCCTTGGAAATTCAGTGTGGTTTCCATAGCTACTCTCTATCCCA
TCACTCTAGCACTTATCACCCTCTGGAATTACCTTGTTCATTTATTTACTTATTTATTGC
TTGGGTCCCCTCCTCTTCCTCATGTAAACTTCATGACTGCCAACACCTGTTTACTGCTAC
ACTTTAAGTTCCCAGCACTAGTTAAGAGCTCAATAAATGCTTGTTGACCGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGTGCCCAGCAGTGGCGGTGCAGGAGCCCCTCCTGGGCTATTTTCTGTACTCAGCTC
AGAGCTGAGGGAGAGGGTGGAGGGGATCCATCTTTCTTCAGGCTCCACTATGGTCCATTC
CAGAAGTCATTCAAACTTGTTTTAAGCTGGCTGATTTGCTTATTGGCTTCAAAAGTTGGA
ATTGAAGGGTGAAGGATGCAGGCAACAGATCCTTCCCCCACTCCTCCTCCACCCCTCCGA
TCCTTCTACTCAGGAGGCCCGGGGGGTGGGGGGAAGTGGAGCCAAACCCTAACCCAAAAG
GTATTGAGGCTCACTGTTCTTCCAGACTTAGTCTACTTTACTTGTGACTCAGAAGCCCTT
TCCCTACCCAGCAAGACCACACTCTCTTGCTTCCTTCTCTTTTCTCTTTTTGTACCTGTA
AACAATATATTGTCATATCTATTCAATGCTTGTGCCCACCTCAGGGCTCTGTTCTTGCTG
TTCATTCTGCCTTGATGTTCTGGCCCAAGATCTTTGCTCTAATGCCTTAAGCTCCATTAT
CATCTCAGAGAGGCTTTCCTTGGAAATTCAGTGTGGTTTCCATAGCTACTCTCTATCCCA
TCACTCTAGCACTTATCACCCTCTGGAATTACCTTGTTCATTTATTTACTTATTTATTGC
TTGGGTCCCCTCCTCTTCCTCATGTAAACTTCATGACTGCCAACACCTGTTTACTGCTAC
ACTTTAAGTTCCCAGCACTAGTTAAGAGCTCAATAAATGCTTGTTGACCGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-293, + strand, RNAz p=0.984174

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-293, + strand, RNAz p=0.984174

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               153-373, - strand, RNAmicro p=0.999936

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               153-373, - strand, RNAmicro p=0.999936

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK124766, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK124766, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-768, gnl|bosTau2|chr22 (10143066-10143825)
               

               
               2-768, gnl|Hg17|chr3 (39531685-39532494)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-768, gnl|bosTau2|chr22 (10143066-10143825)
               

               
               2-768, gnl|Hg17|chr3 (39531685-39532494)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (1.35796)
               

               
               fhi (0.847889)
               

               
               fco (0.78604)
               

               
               hyp (0.571347)
               

               
               spc (0.566829)
               

               
               cbe (0.478469)
               

               
               fbs (0.175346)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.35796)
               

               
               fhi (0.847889)
               

               
               fco (0.78604)
               

               
               hyp (0.571347)
               

               
               spc (0.566829)
               

               
               cbe (0.478469)
               

               
               fbs (0.175346)

	2-768, gnl\|bosTau2\|chr22 (10143066-10143825)
	2-768, gnl\|Hg17\|chr3 (39531685-39532494)

	fce (1.35796)
	fhi (0.847889)
	fco (0.78604)
	hyp (0.571347)
	spc (0.566829)
	cbe (0.478469)
	fbs (0.175346)