Non-Coding RNA Search

Ss1.1-rfhi4030b_d5.5

Sequence:


               
               CCGACTGCGTGTTCGTGGAGGACGTGGCCGTGGTGTGCGAGGAGACGGCGCTCATCACCC
GCCCCGGGGCGCCGAGCCGGAGGAAGGAGGTTGACATGATGAAAGAGGCACTGGAAAAAC
TTCAGCTCAACATAGTAGAGATGCAAGATGAAAATGCAACCTTGGACGGTGGGGATGTCT
TATTCACAGGCAGAGAATTTTTTGTGGGCCTTTCCAAAAGGACAAATCAACGAGGTGCTG
AGATCTTGGCAGATACTTTTAAGGACTATGCGGTGTCCACAGTCCCGGTGGCCGACTCTT
TGCATCTGAAGAGCTTCTGCAGCATGGCTGGGCCGAACCTCATTGCCATTGGATCCAGTG
ACTCTGCCCAGAAGGCCCTCAAGATCATGCAGCAGATGAGCGACCACCGCTACGACAAAC
TCACTGTGCCTGACGACACGGCCGCAAACTGTGTGTATCTCAATATCCCCGGCAAAGGCC
ACGTCCTGCTGCACCGAACCCCAGAAGAGTATCCCGAGAGCGCGAAGGTATACGAGAAGC
TGAAGGACCACCTGCTGATCCCAGTGAGCCACTCGGAGCTGGAAAAGGTGGACGGGCTGC
TCACCTGCTGCTCGATTTTCATCAACAAGAAGGCAGACTGCTGAGCTGCGCCGCCCGGGC
CGCGGCCCTGCCGGGAAGGCGGTCCGTCCCGCCGCGTGGACAATCTCCTCCGCCACCCTC
GCGCCACTAACTCCCGCCGCCAAGTCTAATCGCTTCGTTCTGCACCTCCTCCCCGCCCCC
GCAGTGGTACCTAAACTGTGGATTTGCTCAGCGAATTAAGCAATCTAGAAAATCTAGACC
GAATGAAGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGACTGCGTGTTCGTGGAGGACGTGGCCGTGGTGTGCGAGGAGACGGCGCTCATCACCC
GCCCCGGGGCGCCGAGCCGGAGGAAGGAGGTTGACATGATGAAAGAGGCACTGGAAAAAC
TTCAGCTCAACATAGTAGAGATGCAAGATGAAAATGCAACCTTGGACGGTGGGGATGTCT
TATTCACAGGCAGAGAATTTTTTGTGGGCCTTTCCAAAAGGACAAATCAACGAGGTGCTG
AGATCTTGGCAGATACTTTTAAGGACTATGCGGTGTCCACAGTCCCGGTGGCCGACTCTT
TGCATCTGAAGAGCTTCTGCAGCATGGCTGGGCCGAACCTCATTGCCATTGGATCCAGTG
ACTCTGCCCAGAAGGCCCTCAAGATCATGCAGCAGATGAGCGACCACCGCTACGACAAAC
TCACTGTGCCTGACGACACGGCCGCAAACTGTGTGTATCTCAATATCCCCGGCAAAGGCC
ACGTCCTGCTGCACCGAACCCCAGAAGAGTATCCCGAGAGCGCGAAGGTATACGAGAAGC
TGAAGGACCACCTGCTGATCCCAGTGAGCCACTCGGAGCTGGAAAAGGTGGACGGGCTGC
TCACCTGCTGCTCGATTTTCATCAACAAGAAGGCAGACTGCTGAGCTGCGCCGCCCGGGC
CGCGGCCCTGCCGGGAAGGCGGTCCGTCCCGCCGCGTGGACAATCTCCTCCGCCACCCTC
GCGCCACTAACTCCCGCCGCCAAGTCTAATCGCTTCGTTCTGCACCTCCTCCCCGCCCCC
GCAGTGGTACCTAAACTGTGGATTTGCTCAGCGAATTAAGCAATCTAGAAAATCTAGACC
GAATGAAGTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57997565|emb|CAI45988.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57997565|emb|CAI45988.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               526-644, - strand, RNAz p=0.510463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               526-644, - strand, RNAz p=0.510463

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               262-383, gnl|bosTau2|chr3 (44322094-44322215)
               

               
               262-383, gnl|Hg17|chr1 (85528240-85528119)
               

               
               262-383, gnl|Mm7|chr3 (145750319-145750440)
               


               
               526-852, gnl|bosTau2|chr3 (44354290-44354647)
               

               
               526-852, gnl|Hg17|chr1 (85499274-85498908)
               

               
               526-852, gnl|Mm7|chr3 (145788604-145788979)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               262-383, gnl|bosTau2|chr3 (44322094-44322215)
               

               
               262-383, gnl|Hg17|chr1 (85528240-85528119)
               

               
               262-383, gnl|Mm7|chr3 (145750319-145750440)
               


               
               526-852, gnl|bosTau2|chr3 (44354290-44354647)
               

               
               526-852, gnl|Hg17|chr1 (85499274-85498908)
               

               
               526-852, gnl|Mm7|chr3 (145788604-145788979)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               pla (0.133672)

	262-383, gnl\|bosTau2\|chr3 (44322094-44322215)
	262-383, gnl\|Hg17\|chr1 (85528240-85528119)
	262-383, gnl\|Mm7\|chr3 (145750319-145750440)

	526-852, gnl\|bosTau2\|chr3 (44354290-44354647)
	526-852, gnl\|Hg17\|chr1 (85499274-85498908)
	526-852, gnl\|Mm7\|chr3 (145788604-145788979)