Non-Coding RNA Search

Ss1.1-rfhi4030b_f9.5

Sequence:


               
               CTGCCTTCCCCTCAGCCCCCAGCTCTTTCCCATAAAGCTCCCCAGCTGCTTCTGGTCAGA
GCTGAAGCCATACACAATTGGGTGTTTCGCCCTCTTGGCCCCAGGAGTAAAACACTTCTC
CTTTTCTCACTTCCTTTCCTGCCTTGTGAGGTGGCAGGGCAGTTCCCTGGCTGAGGCCTT
CCGTACCCCCGCCTCCAGGGCCAAGGGCCATTTCTCGACTAGGTGTCTTCTGCCTTGGCC
CATCCCCAGCCTCCCTGACCTGAGGGCCTGGTCTCCCATTGGCAGCTGTGATACAAAGGG
AATTTGTCCCCACTTCACCCAGTCTGGTGCTGTCCTCAGTCCACTGTCAGCCAGGTCAGG
CGCTTCCTCTGGGGCTGGTCGCAGGCTTCTGCCTCCCCCAGCCCCTCCCGAGGGCTGGGG
CCAGGCCTCTTATGTTCAGAGGCCACCTGCCCTCCATCCCACCAGACACTTTCCTGCCCC
GTCTCAACCTGGGCCCCGCGCCCGTGAGCCCCCCCACCCCGACCCAAGATTCTCCAAACT
GACTCTAAGTGTTTCCTGCCCAGAGGAGAGAGGGGTCCGACTGCAAAGGGCCAGATGCCC
TCCCCTCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTTCCCCTCAGCCCCCAGCTCTTTCCCATAAAGCTCCCCAGCTGCTTCTGGTCAGA
GCTGAAGCCATACACAATTGGGTGTTTCGCCCTCTTGGCCCCAGGAGTAAAACACTTCTC
CTTTTCTCACTTCCTTTCCTGCCTTGTGAGGTGGCAGGGCAGTTCCCTGGCTGAGGCCTT
CCGTACCCCCGCCTCCAGGGCCAAGGGCCATTTCTCGACTAGGTGTCTTCTGCCTTGGCC
CATCCCCAGCCTCCCTGACCTGAGGGCCTGGTCTCCCATTGGCAGCTGTGATACAAAGGG
AATTTGTCCCCACTTCACCCAGTCTGGTGCTGTCCTCAGTCCACTGTCAGCCAGGTCAGG
CGCTTCCTCTGGGGCTGGTCGCAGGCTTCTGCCTCCCCCAGCCCCTCCCGAGGGCTGGGG
CCAGGCCTCTTATGTTCAGAGGCCACCTGCCCTCCATCCCACCAGACACTTTCCTGCCCC
GTCTCAACCTGGGCCCCGCGCCCGTGAGCCCCCCCACCCCGACCCAAGATTCTCCAAACT
GACTCTAAGTGTTTCCTGCCCAGAGGAGAGAGGGGTCCGACTGCAAAGGGCCAGATGCCC
TCCCCTCCCCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-270, - strand, RNAz p=0.967615
               

               
               311-499, - strand, RNAz p=0.978952

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-270, - strand, RNAz p=0.967615
               

               
               311-499, - strand, RNAz p=0.978952

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               379-476, - strand, RNAmicro p=0.995567
               

               
               186-311, - strand, RNAmicro p=0.989928

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               379-476, - strand, RNAmicro p=0.995567
               

               
               186-311, - strand, RNAmicro p=0.989928

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-611, gnl|bosTau2|chr15 (16871678-16872288)
               

               
               1-611, gnl|Hg17|chr11 (118272924-118272301)
               

               
               1-611, gnl|Mm7|chr9 (44445402-44445992)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-611, gnl|bosTau2|chr15 (16871678-16872288)
               

               
               1-611, gnl|Hg17|chr11 (118272924-118272301)
               

               
               1-611, gnl|Mm7|chr9 (44445402-44445992)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               med (0.116252)

	1-270, - strand, RNAz p=0.967615
	311-499, - strand, RNAz p=0.978952

	379-476, - strand, RNAmicro p=0.995567
	186-311, - strand, RNAmicro p=0.989928

	1-611, gnl\|bosTau2\|chr15 (16871678-16872288)
	1-611, gnl\|Hg17\|chr11 (118272924-118272301)
	1-611, gnl\|Mm7\|chr9 (44445402-44445992)