Non-Coding RNA Search

Ss1.1-rfhi4030b_n3.5

Sequence:


               
               GTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTTTGCCATGATGAGTATGGGGATAAGACA
CTTAGATCTATTTTCAAAAGAAATTACTTAGTAACAAGAAATCTGACATACTGCATTCTT
CCATTTGCCACAAGAACATACTGACATTGAGGACTAGTTGAAAGAAATGCTTAACTCTAA
GTCACAGGACTGGACCTGGCTCACTGCCTAGGTCTCTGGGGTCCCCGAAACTGGACCCCA
GTTCAGGACCTTCAGGACACTGAGAGATCTCAAAAGCGGGTTCGGACCATGTTTAACTTG
GAGCAGCTGGAAGAGCTGGAAAAAGTGTTTGCAAAACAGCACAATCTGGTGGGGAAGAAG
AGAGCCCAGCTGGCAGCCCAGCTCAACCTTACAGAGAACCAGGTCAGGGTCTGGTTCCAA
AACCGCAGGGTCAAGTATCAGAAGCAGCAAAGGCTGAAGGTACCAACTGCATCTGCCATG
GCTGCCTCCCCGGATGAGCCCTCCAGCAGCTCCGATACCAGCGTCCAGAGAGAAGACACA
GAGCCAGGAATGGATAGCTGAGGATGGGGACAGAGGCTCAGCTCAGGCTGTCTGGGCTGG
TTCTTCCTGGGGGCACCCACTGGACCTCCCTGTTTCACTTCTTAATGAAGAGCCTTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTTTGCCATGATGAGTATGGGGATAAGACA
CTTAGATCTATTTTCAAAAGAAATTACTTAGTAACAAGAAATCTGACATACTGCATTCTT
CCATTTGCCACAAGAACATACTGACATTGAGGACTAGTTGAAAGAAATGCTTAACTCTAA
GTCACAGGACTGGACCTGGCTCACTGCCTAGGTCTCTGGGGTCCCCGAAACTGGACCCCA
GTTCAGGACCTTCAGGACACTGAGAGATCTCAAAAGCGGGTTCGGACCATGTTTAACTTG
GAGCAGCTGGAAGAGCTGGAAAAAGTGTTTGCAAAACAGCACAATCTGGTGGGGAAGAAG
AGAGCCCAGCTGGCAGCCCAGCTCAACCTTACAGAGAACCAGGTCAGGGTCTGGTTCCAA
AACCGCAGGGTCAAGTATCAGAAGCAGCAAAGGCTGAAGGTACCAACTGCATCTGCCATG
GCTGCCTCCCCGGATGAGCCCTCCAGCAGCTCCGATACCAGCGTCCAGAGAGAAGACACA
GAGCCAGGAATGGATAGCTGAGGATGGGGACAGAGGCTCAGCTCAGGCTGTCTGGGCTGG
TTCTTCCTGGGGGCACCCACTGGACCTCCCTGTTTCACTTCTTAATGAAGAGCCTTGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870796|ref|XP_601551.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870796|ref|XP_601551.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               43-180, gnl|bosTau2|chr13 (30461607-30461477)
               

               
               43-180, gnl|Hg17|chr20 (5029011-5029145)
               

               
               43-180, gnl|Mm7|chr2 (131980901-131981031)
               


               
               185-407, gnl|bosTau2|chr11 (8903195-8903417)
               

               
               185-407, gnl|Hg17|chr2 (73347180-73347402)
               

               
               185-407, gnl|Mm7|chr6 (85454952-85455171)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-180, gnl|bosTau2|chr13 (30461607-30461477)
               

               
               43-180, gnl|Hg17|chr20 (5029011-5029145)
               

               
               43-180, gnl|Mm7|chr2 (131980901-131981031)
               


               
               185-407, gnl|bosTau2|chr11 (8903195-8903417)
               

               
               185-407, gnl|Hg17|chr2 (73347180-73347402)
               

               
               185-407, gnl|Mm7|chr6 (85454952-85455171)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)

	43-180, gnl\|bosTau2\|chr13 (30461607-30461477)
	43-180, gnl\|Hg17\|chr20 (5029011-5029145)
	43-180, gnl\|Mm7\|chr2 (131980901-131981031)

	185-407, gnl\|bosTau2\|chr11 (8903195-8903417)
	185-407, gnl\|Hg17\|chr2 (73347180-73347402)
	185-407, gnl\|Mm7\|chr6 (85454952-85455171)