Non-Coding RNA Search

Ss1.1-rfhi4031b_p23.5

Sequence:


               
               TCTCTCTCCAGGCTGGCGGGCCAGCGGGAGGGTCATTCTCAGAGAATGTGTGCGCAGAGT
CCTTGTCACTTAGGACAATCAGGGCCCATCTTCTGCCAAATGTCCGACCCCATGGGGTTG
CTCTGTGTTTGCATTTCAGCAAGTGACTTCTGGGAAGTCCCCGCTGCTGCGGGGGTTCTA
TGATATTTGTAGGCGGCGGGGCTCGGCCAGCCAGCGCCCCGCGAGTAGAGGGCTTGCTTC
AGATCCGGTGCTGCCGGGCCAGCGGGCCGGCCGTGCCATGGGCACATTTGCCTTTTGTAA
AGGCGGAGCTCAAGGTGTATCCTCATAGGAAAGAGAGTCAGCCTGGATGGGTGCGGAAGG
ACCAGGCAGGGCCATGGCTGAGGGGCCCCTGCGTCGGCTTGGTCATCTGGTTCGGGGCTC
ACAGTGGGCTGTGTGTGGGGGGGGAGGGTCCTCCACATGATCCTTAAAGGATTCCCGTGT
GGGTGGGTGTGCGTGGGCACGACTCTGTACTCAGAATTTGAACTCTCGGTCACGTGGGAG
CCACGGGACTGCTCTTCGAGACTCTTCTAATAAAATCTGACTACTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTCTCCAGGCTGGCGGGCCAGCGGGAGGGTCATTCTCAGAGAATGTGTGCGCAGAGT
CCTTGTCACTTAGGACAATCAGGGCCCATCTTCTGCCAAATGTCCGACCCCATGGGGTTG
CTCTGTGTTTGCATTTCAGCAAGTGACTTCTGGGAAGTCCCCGCTGCTGCGGGGGTTCTA
TGATATTTGTAGGCGGCGGGGCTCGGCCAGCCAGCGCCCCGCGAGTAGAGGGCTTGCTTC
AGATCCGGTGCTGCCGGGCCAGCGGGCCGGCCGTGCCATGGGCACATTTGCCTTTTGTAA
AGGCGGAGCTCAAGGTGTATCCTCATAGGAAAGAGAGTCAGCCTGGATGGGTGCGGAAGG
ACCAGGCAGGGCCATGGCTGAGGGGCCCCTGCGTCGGCTTGGTCATCTGGTTCGGGGCTC
ACAGTGGGCTGTGTGTGGGGGGGGAGGGTCCTCCACATGATCCTTAAAGGATTCCCGTGT
GGGTGGGTGTGCGTGGGCACGACTCTGTACTCAGAATTTGAACTCTCGGTCACGTGGGAG
CCACGGGACTGCTCTTCGAGACTCTTCTAATAAAATCTGACTACTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-303, + strand, RNAz p=0.882625

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-303, + strand, RNAz p=0.882625

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC087840, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC087840, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-588, gnl|bosTau2|chr16 (36448941-36449495)
               

               
               1-588, gnl|Hg17|chr1 (2492946-2492353)
               

               
               1-588, gnl|Mm7|chr4 (153951338-153951907)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr16 (36448941-36449495)
               

               
               1-588, gnl|Hg17|chr1 (2492946-2492353)
               

               
               1-588, gnl|Mm7|chr4 (153951338-153951907)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.682012)
               

               
               fhi (0.169578)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.682012)
               

               
               fhi (0.169578)
               

               
               eje (0.0988338)

	1-588, gnl\|bosTau2\|chr16 (36448941-36449495)
	1-588, gnl\|Hg17\|chr1 (2492946-2492353)
	1-588, gnl\|Mm7\|chr4 (153951338-153951907)