Non-Coding RNA Search

Ss1.1-rfhi4032b_i19.5

Sequence:


               
               CGGAGCGCCAGTGGAAGGCCGAGTTCCACCGCTGGAGCTCCTACATGGTGCACTGGAAGA
ACCAGTTTGACCATTACAGCAAGCAGGATCGCTGCTCAGACCTGTGATCCAGGCGGGACC
CCACGTCCCTCTGCCCTGCCCGCCTCGCCCAGCCCCCCCAGCTGTATATACTATTTATTT
AAGGGCTGGGATATAACAGAGAGGATTCCTAGACCCTGCCCACCCACCTTTCCCCTGGGG
CTCCCCGCCCTCTGCATGTCTCGGGCCGAGCCCCCTCCCCCACGGTGCCTTCGCCCCTCT
GGGCTGCCAATAAACTGTTATCAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGCGCCAGTGGAAGGCCGAGTTCCACCGCTGGAGCTCCTACATGGTGCACTGGAAGA
ACCAGTTTGACCATTACAGCAAGCAGGATCGCTGCTCAGACCTGTGATCCAGGCGGGACC
CCACGTCCCTCTGCCCTGCCCGCCTCGCCCAGCCCCCCCAGCTGTATATACTATTTATTT
AAGGGCTGGGATATAACAGAGAGGATTCCTAGACCCTGCCCACCCACCTTTCCCCTGGGG
CTCCCCGCCCTCTGCATGTCTCGGGCCGAGCCCCCTCCCCCACGGTGCCTTCGCCCCTCT
GGGCTGCCAATAAACTGTTATCAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3746576|gb|AAC64269.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3746576|gb|AAC64269.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.640679

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.640679

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-327, gnl|bosTau2|chr25 (32921613-32921943)
               

               
               1-327, gnl|Hg17|chr7 (100132592-100132266)
               

               
               1-327, gnl|Mm7|chr5 (136212400-136212729)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-327, gnl|bosTau2|chr25 (32921613-32921943)
               

               
               1-327, gnl|Hg17|chr7 (100132592-100132266)
               

               
               1-327, gnl|Mm7|chr5 (136212400-136212729)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fhi (0.169578)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               nbm (0.0993246)

	1-327, gnl\|bosTau2\|chr25 (32921613-32921943)
	1-327, gnl\|Hg17\|chr7 (100132592-100132266)
	1-327, gnl\|Mm7\|chr5 (136212400-136212729)