Non-Coding RNA Search

Ss1.1-rfhi4032b_k8.5

Sequence:


               
               AGGGATAGAATACATGAATGATGATCCTGGCATGGGGGATGTTCTTTATGCCAAAGTCCA
CATGAAAGATGGCTCCAACAGGCTGCAGGAATTGGTTGATCGAGTGCTAGAACGTTTTCA
GGCATCTGGATTGATAGTGAAAGAGTGGAATAGTGTGAAACTCCATGCTACAGTCATGAA
TACTCTATTCAGGAAAGACCCCAATGCTGAAGGCAGGTACAATCTCTATACAGCGGATGG
CAAATATATCTTCAAGGAAAGAGAATCATTTGATGGCCGAAACATTTTAAAGCTGTTTGA
GAACTTCTACTTTGGTACTCTGAAGCTCAACTCAATTCACATCTCTCAGAGGTTCACTGT
AGACAGCTTTGGAAACTACGCCTCCTGTGGACAAATTGACTTCTCCTGAGGTGGATCGTG
AAAAACAGTCAAAATTGAACATCCTCACAAGTGGCACGCGAAACAATGATGATATCAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGATAGAATACATGAATGATGATCCTGGCATGGGGGATGTTCTTTATGCCAAAGTCCA
CATGAAAGATGGCTCCAACAGGCTGCAGGAATTGGTTGATCGAGTGCTAGAACGTTTTCA
GGCATCTGGATTGATAGTGAAAGAGTGGAATAGTGTGAAACTCCATGCTACAGTCATGAA
TACTCTATTCAGGAAAGACCCCAATGCTGAAGGCAGGTACAATCTCTATACAGCGGATGG
CAAATATATCTTCAAGGAAAGAGAATCATTTGATGGCCGAAACATTTTAAAGCTGTTTGA
GAACTTCTACTTTGGTACTCTGAAGCTCAACTCAATTCACATCTCTCAGAGGTTCACTGT
AGACAGCTTTGGAAACTACGCCTCCTGTGGACAAATTGACTTCTCCTGAGGTGGATCGTG
AAAAACAGTCAAAATTGAACATCCTCACAAGTGGCACGCGAAACAATGATGATATCAGCG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-208, gnl|bosTau2|chr1 (81753791-81753584)
               


               
               289-451, gnl|bosTau2|chr1 (81753589-81753429)
               

               
               289-451, gnl|Hg17|chr10 (73527215-73527056)
               

               
               289-451, gnl|Mm7|chr10 (59616290-59616445)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-208, gnl|bosTau2|chr1 (81753791-81753584)
               


               
               289-451, gnl|bosTau2|chr1 (81753589-81753429)
               

               
               289-451, gnl|Hg17|chr10 (73527215-73527056)
               

               
               289-451, gnl|Mm7|chr10 (59616290-59616445)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ova (0.129132)

	1-208, gnl\|bosTau2\|chr1 (81753791-81753584)

	289-451, gnl\|bosTau2\|chr1 (81753589-81753429)
	289-451, gnl\|Hg17\|chr10 (73527215-73527056)
	289-451, gnl\|Mm7\|chr10 (59616290-59616445)