Non-Coding RNA Search

Ss1.1-rfhi4035b_h12.5

Sequence:


               
               CTGTGCCTTCTTTGGCCCATAGAGAGTGCTGAGCTTGATGAGCATTTGAGCCAGGAATGG
TGCTTCTTTGCTTATTAACTTCTGCAAGTTTTTGGATGCAACTGAGCCACGGTTCTTCTT
TGTTGCTTCCTTATTAGTTCTCAGTAGGCACAGAGGTCACCTACTGTTTTTGTGGCATCT
ATTTATGGTTCCTCTTCCTGTTTTTGCTTCCTCAAGAGGCAGTTAGCATTCTGTGATTTT
ATTTAACTCTTCCTATGATTAGCAGGAGGAAGAAGACTCTGATGAAGACTGTCCACAGGG
AAGCCAACAACTTTCTTTGCCAAATCCAGCATCCCGTGTTCCTACTGACGACCACCTCAC
CTACTCTAATGAGACTGAGCCTGTTAGGGTCCTGCTACCAGATGAAAAGAAGGAGATCAA
ACAACCAGCCCTTTCCATGTCCAATTTACATGAGGCCACGATGTGAGTGTAAATCCTTAG
TATGGAGTCTCCTTTTAACTCCTTCTGGTCTGGGGAACCTTATAGGTACACACAGAATTC
TGCAGAGCAAATTTCTTTAAAATTTGCTACAGTCACACATCTTTTCAGCAGGGTCTGGCA
CCAATCTAATACTCGACAGTGTGTTAAGCAGAGTTGACCTTTGAAAATGCTGTACCAAAA
GGAACTGGGATCCTGGGTTGGGTCAAGAGGTGTCAGGGTCTTTATCCTAGTCTATTCTAT
TTTATTAGGATAAAAGTTTCTCCAGACTGGGCCTTTAAATGAGCTGAACTTTTTTCACTT
AATGGTCCCTCAATCAAGAGCTATTTGGCTTATCGTCATCATCATCATTGTCATCATCAT
CATTATTATTCAGTAGCAGGCGTGCCTCTTGATCATTTGACCTTCTTTGGTTTATGTATT
ATAGGCCAGATTTTGAGATTTTCTTTAACAGGTATTATAGTGTGGTAATTGTATGTCCCA
AGAAAAGGATAGAATACTCACAAATATACGGCTAGACCAAGGGCTAAATTGTAAGCTGAG
ATTTTAGTGTGCTTATATCAGTTGGTACCCCAATTTCAGCTCAGAGAAGAGTGACCTGTT
TGGAAGCAGAATGTTAATCTTTCCTCTTCCTTCCTTTCTTTTTGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGCCTTCTTTGGCCCATAGAGAGTGCTGAGCTTGATGAGCATTTGAGCCAGGAATGG
TGCTTCTTTGCTTATTAACTTCTGCAAGTTTTTGGATGCAACTGAGCCACGGTTCTTCTT
TGTTGCTTCCTTATTAGTTCTCAGTAGGCACAGAGGTCACCTACTGTTTTTGTGGCATCT
ATTTATGGTTCCTCTTCCTGTTTTTGCTTCCTCAAGAGGCAGTTAGCATTCTGTGATTTT
ATTTAACTCTTCCTATGATTAGCAGGAGGAAGAAGACTCTGATGAAGACTGTCCACAGGG
AAGCCAACAACTTTCTTTGCCAAATCCAGCATCCCGTGTTCCTACTGACGACCACCTCAC
CTACTCTAATGAGACTGAGCCTGTTAGGGTCCTGCTACCAGATGAAAAGAAGGAGATCAA
ACAACCAGCCCTTTCCATGTCCAATTTACATGAGGCCACGATGTGAGTGTAAATCCTTAG
TATGGAGTCTCCTTTTAACTCCTTCTGGTCTGGGGAACCTTATAGGTACACACAGAATTC
TGCAGAGCAAATTTCTTTAAAATTTGCTACAGTCACACATCTTTTCAGCAGGGTCTGGCA
CCAATCTAATACTCGACAGTGTGTTAAGCAGAGTTGACCTTTGAAAATGCTGTACCAAAA
GGAACTGGGATCCTGGGTTGGGTCAAGAGGTGTCAGGGTCTTTATCCTAGTCTATTCTAT
TTTATTAGGATAAAAGTTTCTCCAGACTGGGCCTTTAAATGAGCTGAACTTTTTTCACTT
AATGGTCCCTCAATCAAGAGCTATTTGGCTTATCGTCATCATCATCATTGTCATCATCAT
CATTATTATTCAGTAGCAGGCGTGCCTCTTGATCATTTGACCTTCTTTGGTTTATGTATT
ATAGGCCAGATTTTGAGATTTTCTTTAACAGGTATTATAGTGTGGTAATTGTATGTCCCA
AGAAAAGGATAGAATACTCACAAATATACGGCTAGACCAAGGGCTAAATTGTAAGCTGAG
ATTTTAGTGTGCTTATATCAGTTGGTACCCCAATTTCAGCTCAGAGAAGAGTGACCTGTT
TGGAAGCAGAATGTTAATCTTTCCTCTTCCTTCCTTTCTTTTTGTTCC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-533, gnl|bosTau2|chr28 (10271269-10271792)
               

               
               1-533, gnl|Hg17|chr10 (60683035-60682515)
               

               
               1-533, gnl|Mm7|chr10 (70154996-70155501)
               


               
               563-1117, gnl|bosTau2|chr28 (10272182-10272715)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-533, gnl|bosTau2|chr28 (10271269-10271792)
               

               
               1-533, gnl|Hg17|chr10 (60683035-60682515)
               

               
               1-533, gnl|Mm7|chr10 (70154996-70155501)
               


               
               563-1117, gnl|bosTau2|chr28 (10272182-10272715)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.339155)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)

	1-533, gnl\|bosTau2\|chr28 (10271269-10271792)
	1-533, gnl\|Hg17\|chr10 (60683035-60682515)
	1-533, gnl\|Mm7\|chr10 (70154996-70155501)

	563-1117, gnl\|bosTau2\|chr28 (10272182-10272715)