Non-Coding RNA Search

Ss1.1-rfhi4036b_o12.5

Sequence:


               
               CCATCAGAGGACACCGGTGCCAGGGGGTAACACAGACAAGAGGCTCTCTGCCATGAATCA
GAGACCAGGAATCTCCTCATTGCCAATTACAGCACGCCAGCTTTGCAAATGGCAGTCATT
TCGTCCAAGACCTCAGCCCTGGTGGGCAGAGCTGAGAGGTGCGGAGGGTTGAAGGGAAGG
AGCAGGAAAAAGTCCAAAACATCCGAGAGAGCCAAGCGAGCTGCAGAGTGAGGACACGGA
GAGCCCTAACCAAAAACTAGAGGAACCCAGAAAATGCTGGCCAGAGCTCCATCTGGCTCG
GGGAGGCCGGGCAGCCTCCCGAGGAGGCGGAAGGGAATGGGGATGGAACCTGCCAACCCG
CCTGCTTTAGTGCTTCCCTTCTGCTTCCACAGCTCATCCGCTTTGGTCCCTCAGGCTCTC
TCCCTCCTCTCATCCTTCTCCCATCTGCTTCCCTATTGCAACAGCCACTGTTTTATTTAA
CTCTTACTACTTGATGGTCTATTCCAGACAAAGAAACAAGCTAGGTGCTAATTCATAACA
ATATAAGTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCAGAGGACACCGGTGCCAGGGGGTAACACAGACAAGAGGCTCTCTGCCATGAATCA
GAGACCAGGAATCTCCTCATTGCCAATTACAGCACGCCAGCTTTGCAAATGGCAGTCATT
TCGTCCAAGACCTCAGCCCTGGTGGGCAGAGCTGAGAGGTGCGGAGGGTTGAAGGGAAGG
AGCAGGAAAAAGTCCAAAACATCCGAGAGAGCCAAGCGAGCTGCAGAGTGAGGACACGGA
GAGCCCTAACCAAAAACTAGAGGAACCCAGAAAATGCTGGCCAGAGCTCCATCTGGCTCG
GGGAGGCCGGGCAGCCTCCCGAGGAGGCGGAAGGGAATGGGGATGGAACCTGCCAACCCG
CCTGCTTTAGTGCTTCCCTTCTGCTTCCACAGCTCATCCGCTTTGGTCCCTCAGGCTCTC
TCCCTCCTCTCATCCTTCTCCCATCTGCTTCCCTATTGCAACAGCCACTGTTTTATTTAA
CTCTTACTACTTGATGGTCTATTCCAGACAAAGAAACAAGCTAGGTGCTAATTCATAACA
ATATAAGTTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               123-239, + strand, RNAz p=0.704661

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               123-239, + strand, RNAz p=0.704661

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of U64569, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of U64569, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-552, gnl|bosTau2|chr23 (24026339-24025825)
               

               
               4-552, gnl|Hg17|chr6 (29747232-29747766)
               

               
               4-552, gnl|Mm7|chr17 (35162795-35162292)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-552, gnl|bosTau2|chr23 (24026339-24025825)
               

               
               4-552, gnl|Hg17|chr6 (29747232-29747766)
               

               
               4-552, gnl|Mm7|chr17 (35162795-35162292)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               hyp (0.142837)

	4-552, gnl\|bosTau2\|chr23 (24026339-24025825)
	4-552, gnl\|Hg17\|chr6 (29747232-29747766)
	4-552, gnl\|Mm7\|chr17 (35162795-35162292)