Non-Coding RNA Search

Ss1.1-rfhi4036b_o2.5

Sequence:


               
               GAACGGGAAGGCGCGGAGGCTGCGGTGCCCGCTGGACACGCAGGGCCCGGGCTCGGGGCT
GAGCGGCGGGCGGAGGCTGCGGCCCAACCAAGAGCGGCTCTCGCTCCGCGCTTTTTCCCG
CGGGCCGCTGATGGCCGGACGCGTCCTGGGGAGGACGTTAGCCACCGTGTCTCTCTCTGT
GAAGACTGAGTGTGTGACGCTCAAATGTACCAGTGGACATAGACAGGAAGGTTTCAGAAA
CTCGTTTTTATCCTGTGGGTTTCATCTTTGCTCCAACATGATGTCTGGCTCTAATGGCAC
CAAAGAGAATTCCCACAACAAGGCCAGGACATCGCCTTACCCAGGCTCAAAAGTTCACCG
CAGCCAGGTTCCTAATGAGAAGGTAGGCTGGCTTGTCGAGTGGCAAGATTATAATCCTGT
GGAATACACTGCAGTCTCTGTCTTGGCTGGACCTAGATGGGCAGATCCTCAGATCAGTGA
AAGCAACTTTTCTCCCAAGTTTAATGAAAAAGATGGACCTATTGAGAGAAAGAGCCAAAA
TGGCCTATATGAGGTTGAAAATGGAAGACCTCGAAATCCTGCAGGACGAACAGGACTGGT
TGGTCGGGGGCTTTTGGGGCGATGGGGCCCCAATCATGCTGCAGATCCCATCATAACAAG
GTGGAAAAGGGACAGAAGTGGAAATAAAATCGCCCACCCCGTTTCTGGGAAAAACATCTT
ACAGTTTGTTGCAATAAAAAGAAAAGACTGTGGAGAATGGGCAATCCCAGGGGGGATGGT
GGATCCAGGAGAGAAAATTAGTGCCACGTTGAAAAGAGAATTTGTTGAGGAAGCTCTCAA
CTCATTACAGAAGTCCAGTGCTGAGAAGAGAGAATTAGAGAAACAGTTGCACAAACTCTT
CAGCCAGGAACATCTAGTGATCTATAAGGGATATGTTGATGATCCTCGAAACACTGATAA
CGCATGGATGGAGACGGAGGCCGTGAACTACCACGATGAAACAGGTGAGATAATGGAGAA
CCTTACCCTAGAAGCTGGAGATGATGCTGGAAAAGTGAAATGGGTGGATATCAATGATAA
ACTCAAGCTTTATGCTAGTCACTCTCAATTCATCAAACTTGTGGCTGAGAAACGAGATGC
GCACTGGAGTGAGAACCCTGAAACTGACTGCCAAGAGTTATAGTTCGCAAATCTCCATGT
AAATCAAAGGCCAGCAAGAGAGCATGTACTGAAAAGAAGGCAGTATCACAGAACTCATAT
ATAAGTAGGTCCCTTGGAAATTATTTTACTCACTTTCAAACTGATTTGCATTTGGAAGGT
TTTGCATCAGAATAAAATTAGTAAATATGATGAAATAGAACACATAATTTTCTGCTTTCC
AGCCAGAAGAGCTATAAACCATCATATTTTGTATGTATTTTATTTAAGCATGGCTTAAAT
CAAATTTGAAGAACAGATGCTCTTTGCAGAATCAGAATCTGAATAAAGATAAATTTTTGT
TCAGCCATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACGGGAAGGCGCGGAGGCTGCGGTGCCCGCTGGACACGCAGGGCCCGGGCTCGGGGCT
GAGCGGCGGGCGGAGGCTGCGGCCCAACCAAGAGCGGCTCTCGCTCCGCGCTTTTTCCCG
CGGGCCGCTGATGGCCGGACGCGTCCTGGGGAGGACGTTAGCCACCGTGTCTCTCTCTGT
GAAGACTGAGTGTGTGACGCTCAAATGTACCAGTGGACATAGACAGGAAGGTTTCAGAAA
CTCGTTTTTATCCTGTGGGTTTCATCTTTGCTCCAACATGATGTCTGGCTCTAATGGCAC
CAAAGAGAATTCCCACAACAAGGCCAGGACATCGCCTTACCCAGGCTCAAAAGTTCACCG
CAGCCAGGTTCCTAATGAGAAGGTAGGCTGGCTTGTCGAGTGGCAAGATTATAATCCTGT
GGAATACACTGCAGTCTCTGTCTTGGCTGGACCTAGATGGGCAGATCCTCAGATCAGTGA
AAGCAACTTTTCTCCCAAGTTTAATGAAAAAGATGGACCTATTGAGAGAAAGAGCCAAAA
TGGCCTATATGAGGTTGAAAATGGAAGACCTCGAAATCCTGCAGGACGAACAGGACTGGT
TGGTCGGGGGCTTTTGGGGCGATGGGGCCCCAATCATGCTGCAGATCCCATCATAACAAG
GTGGAAAAGGGACAGAAGTGGAAATAAAATCGCCCACCCCGTTTCTGGGAAAAACATCTT
ACAGTTTGTTGCAATAAAAAGAAAAGACTGTGGAGAATGGGCAATCCCAGGGGGGATGGT
GGATCCAGGAGAGAAAATTAGTGCCACGTTGAAAAGAGAATTTGTTGAGGAAGCTCTCAA
CTCATTACAGAAGTCCAGTGCTGAGAAGAGAGAATTAGAGAAACAGTTGCACAAACTCTT
CAGCCAGGAACATCTAGTGATCTATAAGGGATATGTTGATGATCCTCGAAACACTGATAA
CGCATGGATGGAGACGGAGGCCGTGAACTACCACGATGAAACAGGTGAGATAATGGAGAA
CCTTACCCTAGAAGCTGGAGATGATGCTGGAAAAGTGAAATGGGTGGATATCAATGATAA
ACTCAAGCTTTATGCTAGTCACTCTCAATTCATCAAACTTGTGGCTGAGAAACGAGATGC
GCACTGGAGTGAGAACCCTGAAACTGACTGCCAAGAGTTATAGTTCGCAAATCTCCATGT
AAATCAAAGGCCAGCAAGAGAGCATGTACTGAAAAGAAGGCAGTATCACAGAACTCATAT
ATAAGTAGGTCCCTTGGAAATTATTTTACTCACTTTCAAACTGATTTGCATTTGGAAGGT
TTTGCATCAGAATAAAATTAGTAAATATGATGAAATAGAACACATAATTTTCTGCTTTCC
AGCCAGAAGAGCTATAAACCATCATATTTTGTATGTATTTTATTTAAGCATGGCTTAAAT
CAAATTTGAAGAACAGATGCTCTTTGCAGAATCAGAATCTGAATAAAGATAAATTTTTGT
TCAGCCATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22760552|dbj|BAC11239.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22760552|dbj|BAC11239.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               515-634, - strand, RNAz p=0.913519

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               515-634, - strand, RNAz p=0.913519

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               123-1509, gnl|bosTau2|chr26 (6236187-6237548)
               

               
               123-1509, gnl|Hg17|chr10 (92903420-92902005)
               

               
               123-1509, gnl|Mm7|chr19 (36040687-36039444)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-1509, gnl|bosTau2|chr26 (6236187-6237548)
               

               
               123-1509, gnl|Hg17|chr10 (92903420-92902005)
               

               
               123-1509, gnl|Mm7|chr19 (36040687-36039444)

Expressed library(ies): 40 entry(ies)

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Expressed library(ies): 40 entry(ies)

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               cbe (1.19617)
               

               
               cbl (0.803582)
               

               
               isp (0.75188)
               

               
               hea (0.613497)
               

               
               lin (0.582411)
               

               
               cje (0.495704)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               spl (0.429553)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.19617)
               

               
               cbl (0.803582)
               

               
               isp (0.75188)
               

               
               hea (0.613497)
               

               
               lin (0.582411)
               

               
               cje (0.495704)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               spl (0.429553)
               

               
               elu (0.385356)
               

               
               bla (0.373042)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               lnt (0.284616)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	123-1509, gnl\|bosTau2\|chr26 (6236187-6237548)
	123-1509, gnl\|Hg17\|chr10 (92903420-92902005)
	123-1509, gnl\|Mm7\|chr19 (36040687-36039444)

	cbe (1.19617)
	cbl (0.803582)
	isp (0.75188)
	hea (0.613497)
	lin (0.582411)
	cje (0.495704)
	tbr (0.462535)
	spc (0.453463)
	spl (0.429553)
	elu (0.385356)
	bla (0.373042)
	bfe (0.299715)
	cte (0.29274)
	liv (0.292569)
	lnt (0.284616)
	ret (0.257467)
	ecc (0.23007)
	aor (0.195274)
	col (0.195008)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	fty (0.17584)
	fhi (0.169578)
	mga (0.160205)
	fat (0.147427)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	clu (0.119646)
	pgl (0.118483)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)