Non-Coding RNA Search

Ss1.1-rfhi4037b_a15.5

Sequence:


               
               AAAATGCCAACCTTCCCCAAGTCCTCCTAAAACGTCCCACCCACCCCTCCTTTCCAGGGC
CATTCAGGGGCAGAAAGCTTCCCCCTCAGCCCCACTCTTTCCTCTCTATGACCTTAGGCG
AGGCTTACCCTTGCAGACCATCAGTTCCTGCCTCTGTATAATGCAAGGTTTGGTCCAGAG
TCTAGAGTTCCAAGATGCTCTTTTTCTCCCCGGAATATAAGTATTACCCTCCATAGGCAA
ATATAGGGGGAGGGGTAGCAGGGTCATTCTCAGCCACTGACCCCCTCCCTCTGTCAGCTG
CACCAGGATGCCTCAGGATGGGCCAGAGATGTCATCTGGACAAGGATGGTGTGAAACCAT
TTGCTCCCTACAGTATGTTTTCTACATGCATTTGGGCATCAGATCCCCTCTGTCCACCCC
ACCGTGAGCTATTATTAGCCCCAGTTAACAGATGAGCTGGTTGAGGGAGACGGGGCAGTC
TGCAGGAACTCGGAACCACATCTTTAGACTCCCGGGACAGATCTTGTTCTACAGCTGGAA
CAGGACCCCACACCTTCCTGGCTTCTAGGGGACACCCTCCCCCAAGGGTGGCACAGGTCC
AGCCCAGAGAGACTTGCTGGTGACTCAGGAGATACTTTGGACATGCATTTAAATGGCTTC
TGAGAGGCAGGGGCAAGAGAACTGGGATGTTTTTGCCCATTAGAGCCCAGAAATTATCAC
CCACGGCTCCTGACCTCATCCTGTAACCAATGTGCTCTCCGGGAGGCCTCAGCCCCTTCA
TCCTGCAGGCTCCCCAGCCATATGCATCATGTCTGTTCTCTACCACTAGGGGGAGCTCCA
AGCCAGCGGGAGAGGGGTGCGCAGGGCCCCAGCCTCTACCATCCCCCGCCTTCAGTCTGG
GGAGGAGGGAAGAGGGGAGGGGGCGGGGAGGCGGGCGTGTTCCTGGAAGGGTCCTCCGTC
TTCTCCACCAGGCGGCCCTTGCTGTCCTTGTGCCAGAGCCCACTCCCCATCGTGCACCCT
TCCACCCCACCTTCCCTTTCAATAAACAGCTAGGATGGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGCCAACCTTCCCCAAGTCCTCCTAAAACGTCCCACCCACCCCTCCTTTCCAGGGC
CATTCAGGGGCAGAAAGCTTCCCCCTCAGCCCCACTCTTTCCTCTCTATGACCTTAGGCG
AGGCTTACCCTTGCAGACCATCAGTTCCTGCCTCTGTATAATGCAAGGTTTGGTCCAGAG
TCTAGAGTTCCAAGATGCTCTTTTTCTCCCCGGAATATAAGTATTACCCTCCATAGGCAA
ATATAGGGGGAGGGGTAGCAGGGTCATTCTCAGCCACTGACCCCCTCCCTCTGTCAGCTG
CACCAGGATGCCTCAGGATGGGCCAGAGATGTCATCTGGACAAGGATGGTGTGAAACCAT
TTGCTCCCTACAGTATGTTTTCTACATGCATTTGGGCATCAGATCCCCTCTGTCCACCCC
ACCGTGAGCTATTATTAGCCCCAGTTAACAGATGAGCTGGTTGAGGGAGACGGGGCAGTC
TGCAGGAACTCGGAACCACATCTTTAGACTCCCGGGACAGATCTTGTTCTACAGCTGGAA
CAGGACCCCACACCTTCCTGGCTTCTAGGGGACACCCTCCCCCAAGGGTGGCACAGGTCC
AGCCCAGAGAGACTTGCTGGTGACTCAGGAGATACTTTGGACATGCATTTAAATGGCTTC
TGAGAGGCAGGGGCAAGAGAACTGGGATGTTTTTGCCCATTAGAGCCCAGAAATTATCAC
CCACGGCTCCTGACCTCATCCTGTAACCAATGTGCTCTCCGGGAGGCCTCAGCCCCTTCA
TCCTGCAGGCTCCCCAGCCATATGCATCATGTCTGTTCTCTACCACTAGGGGGAGCTCCA
AGCCAGCGGGAGAGGGGTGCGCAGGGCCCCAGCCTCTACCATCCCCCGCCTTCAGTCTGG
GGAGGAGGGAAGAGGGGAGGGGGCGGGGAGGCGGGCGTGTTCCTGGAAGGGTCCTCCGTC
TTCTCCACCAGGCGGCCCTTGCTGTCCTTGTGCCAGAGCCCACTCCCCATCGTGCACCCT
TCCACCCCACCTTCCCTTTCAATAAACAGCTAGGATGGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               229-480, - strand, RNAz p=0.999346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-480, - strand, RNAz p=0.999346

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               411-543, - strand, RNAmicro p=0.99993
               

               
               248-312, + strand, RNAmicro p=0.994881

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               411-543, - strand, RNAmicro p=0.99993
               

               
               248-312, + strand, RNAmicro p=0.994881

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-622, gnl|bosTau2|chr13 (41943644-41943023)
               

               
               1-622, gnl|Hg17|chr20 (282459-283056)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-622, gnl|bosTau2|chr13 (41943644-41943023)
               

               
               1-622, gnl|Hg17|chr20 (282459-283056)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)

	411-543, - strand, RNAmicro p=0.99993
	248-312, + strand, RNAmicro p=0.994881

	1-622, gnl\|bosTau2\|chr13 (41943644-41943023)
	1-622, gnl\|Hg17\|chr20 (282459-283056)