Non-Coding RNA Search

Ss1.1-rfhi4037b_m9.5

Sequence:


               
               CCAGCCCCTGGCCCCCGGGATCAAAACCTACCCCAGATCCTGGAGGAGTCCAGGTCTGAA
TGAATCAGAAGGGCTTTCCATCTCCTCCGTGTTCCCCAATTCCTGCCTCTACCCCCACCC
TGTCAGGGACATTTGGCTCCTCTTAGCTGGCTCTGCTCATCCAGAGGATTTCCCTCCTGC
CAAGCTCAGTGGCAGAGCTACAGATGGGACCAAAGGGAGTAGCCGAGCCTCACTGCCTAA
ACCAATGCCCTGCCCATCCCCGTTTCCCCAGGCTCCTGGTCATTTGCCTGCCCCAAAGAA
GCCTCAGGGGGTTGAGACAGGTCCTTCCTGCCATCCCTGTCCCAGCTGCTGCCAGGGATT
AACCACAGAGTGCAGGGGGGATTAACTGCCTCCCTTCAAATGTCCAGTCTCAGCAGGGAG
AGACGTGTGGGGTTGTGGGAATGCATGGGGTGAGGGGGGAGGAGGCTGCTAAATCTTATC
CCCCAGCCTCCCTCCTGCCCTGCAGAACATCTCCCATCTGCTCCCACTCAGTGGGGGGCT
AGGGAGGGTTTCATTCCTGTCTCCCATCTCCTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCCCCTGGCCCCCGGGATCAAAACCTACCCCAGATCCTGGAGGAGTCCAGGTCTGAA
TGAATCAGAAGGGCTTTCCATCTCCTCCGTGTTCCCCAATTCCTGCCTCTACCCCCACCC
TGTCAGGGACATTTGGCTCCTCTTAGCTGGCTCTGCTCATCCAGAGGATTTCCCTCCTGC
CAAGCTCAGTGGCAGAGCTACAGATGGGACCAAAGGGAGTAGCCGAGCCTCACTGCCTAA
ACCAATGCCCTGCCCATCCCCGTTTCCCCAGGCTCCTGGTCATTTGCCTGCCCCAAAGAA
GCCTCAGGGGGTTGAGACAGGTCCTTCCTGCCATCCCTGTCCCAGCTGCTGCCAGGGATT
AACCACAGAGTGCAGGGGGGATTAACTGCCTCCCTTCAAATGTCCAGTCTCAGCAGGGAG
AGACGTGTGGGGTTGTGGGAATGCATGGGGTGAGGGGGGAGGAGGCTGCTAAATCTTATC
CCCCAGCCTCCCTCCTGCCCTGCAGAACATCTCCCATCTGCTCCCACTCAGTGGGGGGCT
AGGGAGGGTTTCATTCCTGTCTCCCATCTCCTCACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-213, - strand, RNAz p=0.991768
               

               
               315-434, + strand, RNAz p=0.821709

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-213, - strand, RNAz p=0.991768
               

               
               315-434, + strand, RNAz p=0.821709

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_003632, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003632, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-458, gnl|bosTau2|chr19 (39014351-39013880)
               

               
               1-458, gnl|Hg17|chr17 (38104392-38104872)
               

               
               1-458, gnl|Mm7|chr11 (101298636-101299126)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-458, gnl|bosTau2|chr19 (39014351-39013880)
               

               
               1-458, gnl|Hg17|chr17 (38104392-38104872)
               

               
               1-458, gnl|Mm7|chr11 (101298636-101299126)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	1-213, - strand, RNAz p=0.991768
	315-434, + strand, RNAz p=0.821709

	1-458, gnl\|bosTau2\|chr19 (39014351-39013880)
	1-458, gnl\|Hg17\|chr17 (38104392-38104872)
	1-458, gnl\|Mm7\|chr11 (101298636-101299126)