Ss1.1-rfhi4039b_g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAGCCCAGAAGGCTCCTGCCCAGAAAGCTGCAGGCCAGAAGGCTGCACCTCCTCCAAA AGCTCAGAAGGTTCAGAAACCTCCAGCCCAGAAAGCACCTGCTCCAAAAGCATCTGGCAA GAAAGCATGAGAGCATAAGAGGCTATTATAAACGTAATAAAAGTTTTTTTTGACATGCAA AAAAAAAAAAAGGGGGGGCCGTTTTAAAATTTCCCTTGGGGGGGCCAAATTTAACCCTAC CCAATTTTTTTTGAAAAAGGGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAGCCCAGAAGGCTCCTGCCCAGAAAGCTGCAGGCCAGAAGGCTGCACCTCCTCCAAA AGCTCAGAAGGTTCAGAAACCTCCAGCCCAGAAAGCACCTGCTCCAAAAGCATCTGGCAA GAAAGCATGAGAGCATAAGAGGCTATTATAAACGTAATAAAAGTTTTTTTTGACATGCAA AAAAAAAAAAAGGGGGGGCCGTTTTAAAATTTCCCTTGGGGGGGCCAAATTTAACCCTAC CCAATTTTTTTTGAAAAAGGGGGC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.624094 | |
| 26-120, - strand, RNAz p=0.706872 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.624094 | |
| 26-120, - strand, RNAz p=0.706872 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr22 (11627136-11627312) | |
| 1-177, gnl|canFam2|chr23 (12920333-12920587) | |
| 1-177, gnl|canFam2|chr3 (17771940-17772172) | |
| 1-177, gnl|canFam2|chr3 (17772158-17771893) | |
| 1-177, gnl|canFam2|chr3 (17772165-17771913) | |
| 1-177, gnl|canFam2|chr3 (17771898-17772163) | |
| 1-177, gnl|canFam2|chr3 (17771910-17772176) | |
| 1-177, gnl|canFam2|chr3 (17771902-17772088) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48630-48430) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48637-48435) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48432-48648) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48429-48584) | |
| 1-177, gnl|dasNov1|scaffold_75352 (4089-3893) | |
| 1-177, gnl|dasNov1|scaffold_75352 (3906-4121) | |
| 1-177, gnl|dasNov1|scaffold_75352 (4131-3873) | |
| 1-177, gnl|echTel1|scaffold_263664 (5039-4709) | |
| 1-177, gnl|echTel1|scaffold_277192 (5049-4772) | |
| 1-177, gnl|echTel1|scaffold_305952 (3360-3612) | |
| 1-177, gnl|echTel1|scaffold_305952 (3598-3302) | |
| 1-177, gnl|echTel1|scaffold_305952 (3605-3340) | |
| 1-177, gnl|echTel1|scaffold_305952 (3337-3616) | |
| 1-177, gnl|echTel1|scaffold_305952 (3325-3507) | |
| 1-177, gnl|hg17|chr12 (61645802-61646096) | |
| 1-177, gnl|hg17|chr12 (94022427-94022668) | |
| 1-177, gnl|hg17|chr3 (40478510-40478769) | |
| 1-177, gnl|hg17|chr3 (62739867-62740096) | |
| 1-177, gnl|Hg17|chr3 (40478598-40478767) | |
| 1-177, gnl|hg17|chr4 (141644962-141645216) | |
| 1-177, gnl|hg17|chr5 (84541561-84541749) | |
| 1-177, gnl|hg17|chr6 (108412916-108413198) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (10226-9965) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9992-10240) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (10226-9959) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (10233-9974) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9959-10261) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9971-10244) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9954-10150) | |
| 1-177, gnl|mm7|chr7 (41501348-41501109) | |
| 1-177, gnl|mm7|chr7 (41501123-41501410) | |
| 1-177, gnl|mm7|chr7 (41501116-41501371) | |
| 1-177, gnl|mm7|chr7 (41501405-41501120) | |
| 1-177, gnl|mm7|chr7 (41501374-41501105) | |
| 1-177, gnl|mm7|chr7 (41501376-41501208) | |
| 1-177, gnl|mm7|chr9 (120272504-120272762) | |
| 1-177, gnl|Mm7|chr9 (120272598-120272760) | |
| 1-177, gnl|monDom2|scaffold_11 (67076102-67075827) | |
| 1-177, gnl|monDom2|scaffold_11 (67075839-67076023) | |
| 1-177, gnl|monDom2|scaffold_132 (2140777-2141012) | |
| 1-177, gnl|monDom2|scaffold_132 (2141005-2140769) | |
| 1-177, gnl|monDom2|scaffold_132 (2140766-2141016) | |
| 1-177, gnl|monDom2|scaffold_7 (89892048-89891804) | |
| 1-177, gnl|oryCun1|scaffold_206619 (65864-65600) | |
| 1-177, gnl|oryCun1|scaffold_87563 (1987-1745) | |
| 1-177, gnl|oryCun1|scaffold_87563 (1759-2020) | |
| 1-177, gnl|oryCun1|scaffold_87563 (1752-2008) | |
| 1-177, gnl|oryCun1|scaffold_87563 (2044-1754) | |
| 1-177, gnl|oryCun1|scaffold_87563 (2011-1741) | |
| 1-177, gnl|oryCun1|scaffold_87563 (2014-1841) | |
| 1-177, gnl|panTro1|chr10_random (34586786-34586545) | |
| 1-177, gnl|panTro1|chr2 (41606422-41606669) | |
| 1-177, gnl|panTro1|chr2 (64525909-64526137) | |
| 1-177, gnl|panTro1|chr2 (41606422-41606680) | |
| 1-177, gnl|panTro1|chr3 (158904014-158904268) | |
| 1-177, gnl|panTro1|chr4 (30621892-30621704) | |
| 1-177, gnl|panTro1|chr5 (110712828-110713105) | |
| 1-177, gnl|rheMac2|chr11 (96364036-96364254) | |
| 1-177, gnl|rheMac2|chr2 (96079291-96079044) | |
| 1-177, gnl|rheMac2|chr2 (73592639-73592409) | |
| 1-177, gnl|rheMac2|chr4 (103993861-103994140) | |
| 1-177, gnl|rheMac2|chr5 (75379807-75379546) | |
| 1-177, gnl|rheMac2|chr5 (132828271-132828525) | |
| 1-177, gnl|rheMac2|chr6 (81450219-81450405) | |
| 1-177, gnl|rn3|chr15 (61408615-61408380) | |
| 1-177, gnl|rn3|chr5 (165747103-165746801) | |
| 1-177, gnl|rn3|chr5 (165747110-165746833) | |
| 1-177, gnl|rn3|chr5 (165746803-165747108) | |
| 1-177, gnl|rn3|chr5 (165746830-165747121) | |
| 1-177, gnl|rn3|chr5 (165746828-165747024) | |
| 1-177, gnl|rn3|chr8 (125604439-125604703) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr22 (11627136-11627312) | |
| 1-177, gnl|canFam2|chr23 (12920333-12920587) | |
| 1-177, gnl|canFam2|chr3 (17771940-17772172) | |
| 1-177, gnl|canFam2|chr3 (17772158-17771893) | |
| 1-177, gnl|canFam2|chr3 (17772165-17771913) | |
| 1-177, gnl|canFam2|chr3 (17771898-17772163) | |
| 1-177, gnl|canFam2|chr3 (17771910-17772176) | |
| 1-177, gnl|canFam2|chr3 (17771902-17772088) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48630-48430) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48637-48435) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48432-48648) | |
| 1-177, gnl|dasNov1|scaffold_2126 (48429-48584) | |
| 1-177, gnl|dasNov1|scaffold_75352 (4089-3893) | |
| 1-177, gnl|dasNov1|scaffold_75352 (3906-4121) | |
| 1-177, gnl|dasNov1|scaffold_75352 (4131-3873) | |
| 1-177, gnl|echTel1|scaffold_263664 (5039-4709) | |
| 1-177, gnl|echTel1|scaffold_277192 (5049-4772) | |
| 1-177, gnl|echTel1|scaffold_305952 (3360-3612) | |
| 1-177, gnl|echTel1|scaffold_305952 (3598-3302) | |
| 1-177, gnl|echTel1|scaffold_305952 (3605-3340) | |
| 1-177, gnl|echTel1|scaffold_305952 (3337-3616) | |
| 1-177, gnl|echTel1|scaffold_305952 (3325-3507) | |
| 1-177, gnl|hg17|chr12 (61645802-61646096) | |
| 1-177, gnl|hg17|chr12 (94022427-94022668) | |
| 1-177, gnl|hg17|chr3 (40478510-40478769) | |
| 1-177, gnl|hg17|chr3 (62739867-62740096) | |
| 1-177, gnl|Hg17|chr3 (40478598-40478767) | |
| 1-177, gnl|hg17|chr4 (141644962-141645216) | |
| 1-177, gnl|hg17|chr5 (84541561-84541749) | |
| 1-177, gnl|hg17|chr6 (108412916-108413198) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (10226-9965) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9992-10240) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (10226-9959) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (10233-9974) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9959-10261) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9971-10244) | |
| 1-177, gnl|loxAfr1|scaffold_29124 (9954-10150) | |
| 1-177, gnl|mm7|chr7 (41501348-41501109) | |
| 1-177, gnl|mm7|chr7 (41501123-41501410) | |
| 1-177, gnl|mm7|chr7 (41501116-41501371) | |
| 1-177, gnl|mm7|chr7 (41501405-41501120) | |
| 1-177, gnl|mm7|chr7 (41501374-41501105) | |
| 1-177, gnl|mm7|chr7 (41501376-41501208) | |
| 1-177, gnl|mm7|chr9 (120272504-120272762) | |
| 1-177, gnl|Mm7|chr9 (120272598-120272760) | |
| 1-177, gnl|monDom2|scaffold_11 (67076102-67075827) | |
| 1-177, gnl|monDom2|scaffold_11 (67075839-67076023) | |
| 1-177, gnl|monDom2|scaffold_132 (2140777-2141012) | |
| 1-177, gnl|monDom2|scaffold_132 (2141005-2140769) | |
| 1-177, gnl|monDom2|scaffold_132 (2140766-2141016) | |
| 1-177, gnl|monDom2|scaffold_7 (89892048-89891804) | |
| 1-177, gnl|oryCun1|scaffold_206619 (65864-65600) | |
| 1-177, gnl|oryCun1|scaffold_87563 (1987-1745) | |
| 1-177, gnl|oryCun1|scaffold_87563 (1759-2020) | |
| 1-177, gnl|oryCun1|scaffold_87563 (1752-2008) | |
| 1-177, gnl|oryCun1|scaffold_87563 (2044-1754) | |
| 1-177, gnl|oryCun1|scaffold_87563 (2011-1741) | |
| 1-177, gnl|oryCun1|scaffold_87563 (2014-1841) | |
| 1-177, gnl|panTro1|chr10_random (34586786-34586545) | |
| 1-177, gnl|panTro1|chr2 (41606422-41606669) | |
| 1-177, gnl|panTro1|chr2 (64525909-64526137) | |
| 1-177, gnl|panTro1|chr2 (41606422-41606680) | |
| 1-177, gnl|panTro1|chr3 (158904014-158904268) | |
| 1-177, gnl|panTro1|chr4 (30621892-30621704) | |
| 1-177, gnl|panTro1|chr5 (110712828-110713105) | |
| 1-177, gnl|rheMac2|chr11 (96364036-96364254) | |
| 1-177, gnl|rheMac2|chr2 (96079291-96079044) | |
| 1-177, gnl|rheMac2|chr2 (73592639-73592409) | |
| 1-177, gnl|rheMac2|chr4 (103993861-103994140) | |
| 1-177, gnl|rheMac2|chr5 (75379807-75379546) | |
| 1-177, gnl|rheMac2|chr5 (132828271-132828525) | |
| 1-177, gnl|rheMac2|chr6 (81450219-81450405) | |
| 1-177, gnl|rn3|chr15 (61408615-61408380) | |
| 1-177, gnl|rn3|chr5 (165747103-165746801) | |
| 1-177, gnl|rn3|chr5 (165747110-165746833) | |
| 1-177, gnl|rn3|chr5 (165746803-165747108) | |
| 1-177, gnl|rn3|chr5 (165746830-165747121) | |
| 1-177, gnl|rn3|chr5 (165746828-165747024) | |
| 1-177, gnl|rn3|chr8 (125604439-125604703) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) |