Non-Coding RNA Search

Ss1.1-rfhi4040b_h8.5

Sequence:


               
               ATTGAACCACATCCTCAAGGACACTATGTCAGGTTCTTCACCTGCTGAGCCACAGCAGGA
ACTCCCAGACCACAATTTCTTCTTCAGAAACCTCCACTCCATGCTGTTCTTTAATATCTC
AGGGAGAAACATGGAAGTGTCCATGCAGATTCACACAAAGGCAGGGAGTTCTAGATCCCG
TAGTGCTGGCCTTCTGGGGTCTCACCAGAGACAGAGTTGTTGTTTTACCCCTTATCTGGG
AAACTCAGATGTGTGTGAGGTATGCCGACGTGAAGGAAAGCTGTTTTGCTGTGATACTTG
TTCGAGATCTTTCCATGAGGACTGCCACATCCCACCTGTGGAAACTGAGAGGACCCCGTG
GAGTTGCACCTTCTGCAGCATGAAGGAGATTTCAGAAAGCCAGCCCTGTCTCAGAGAATC
GGAGGTCCTGGCCAGGCAGATGTGGCCTGAGGAGCAGCTGAAATGTGAGTTCCTCCTCTT
GAAGGTCTATTGCCATTCGGAGAGCTCCTTTTTTGCGAAGATTCCGTATTATTATTATAT
TAAAGAGCTTTCTGAAAACCTAAAGGAACCCATGTGGTTGGACAGAATCAAAAAGAGGCT
GTATGAGCGGAGGTACCGTCGCGTGGAGGGGTTCGTGCAGGACATGCGCCTCATCTTTCA
GAACCACAGGGCGTCTTACAAGTTCAGAGACTTTGGTCTAATGGGACTTAGACTGGAGGC
AGAATTTGAAAAGAATATCAAGGAAGTGTTTGCTATCCAAGAAACAAATGAGAGCAGTTC
ACCGGCATGATGGACGGTGTTGGCATCCTGGAAAAACCTCTTTTTAAGCACATTTCTCAC
CCCAAGCTGCTATGATCATTGGCTGCTGACACCACCCCTCCCCAGAGCATTGTATTCACT
ATGCATGGAGCCACCTTCACAGGGGGTTGGGGGGGTGGTATGTTTCCTTGGCCTGGGGGC
AGACCTCCAGTCCCAAGGTGGACCCACCTCTGTACTGCAATTCTGTGCTTCCCAAGGGAT
CAGGCTGGAGCTAGTCTGCAGCTATGACCACATCTTGCTTTGCTCTTCCCACAACACTGT
CCCTCTTCCCTCACCCCTTTCTCCCAAAGAAACTCACAATAAATGACTTAAGAGCCTTCA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGAACCACATCCTCAAGGACACTATGTCAGGTTCTTCACCTGCTGAGCCACAGCAGGA
ACTCCCAGACCACAATTTCTTCTTCAGAAACCTCCACTCCATGCTGTTCTTTAATATCTC
AGGGAGAAACATGGAAGTGTCCATGCAGATTCACACAAAGGCAGGGAGTTCTAGATCCCG
TAGTGCTGGCCTTCTGGGGTCTCACCAGAGACAGAGTTGTTGTTTTACCCCTTATCTGGG
AAACTCAGATGTGTGTGAGGTATGCCGACGTGAAGGAAAGCTGTTTTGCTGTGATACTTG
TTCGAGATCTTTCCATGAGGACTGCCACATCCCACCTGTGGAAACTGAGAGGACCCCGTG
GAGTTGCACCTTCTGCAGCATGAAGGAGATTTCAGAAAGCCAGCCCTGTCTCAGAGAATC
GGAGGTCCTGGCCAGGCAGATGTGGCCTGAGGAGCAGCTGAAATGTGAGTTCCTCCTCTT
GAAGGTCTATTGCCATTCGGAGAGCTCCTTTTTTGCGAAGATTCCGTATTATTATTATAT
TAAAGAGCTTTCTGAAAACCTAAAGGAACCCATGTGGTTGGACAGAATCAAAAAGAGGCT
GTATGAGCGGAGGTACCGTCGCGTGGAGGGGTTCGTGCAGGACATGCGCCTCATCTTTCA
GAACCACAGGGCGTCTTACAAGTTCAGAGACTTTGGTCTAATGGGACTTAGACTGGAGGC
AGAATTTGAAAAGAATATCAAGGAAGTGTTTGCTATCCAAGAAACAAATGAGAGCAGTTC
ACCGGCATGATGGACGGTGTTGGCATCCTGGAAAAACCTCTTTTTAAGCACATTTCTCAC
CCCAAGCTGCTATGATCATTGGCTGCTGACACCACCCCTCCCCAGAGCATTGTATTCACT
ATGCATGGAGCCACCTTCACAGGGGGTTGGGGGGGTGGTATGTTTCCTTGGCCTGGGGGC
AGACCTCCAGTCCCAAGGTGGACCCACCTCTGTACTGCAATTCTGTGCTTCCCAAGGGAT
CAGGCTGGAGCTAGTCTGCAGCTATGACCACATCTTGCTTTGCTCTTCCCACAACACTGT
CCCTCTTCCCTCACCCCTTTCTCCCAAAGAAACTCACAATAAATGACTTAAGAGCCTTCA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873950|ref|XP_585390.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873950|ref|XP_585390.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               66-371, gnl|bosTau2|chr2 (70727696-70727392)
               

               
               66-371, gnl|Hg17|chr2 (230999970-231000280)
               

               
               66-371, gnl|Mm7|chr1 (85256098-85256374)
               


               
               676-1130, gnl|bosTau2|chr2 (70724883-70724469)
               

               
               676-1130, gnl|Hg17|chr2 (231002801-231003851)
               

               
               676-1130, gnl|Mm7|chr1 (85130954-85130510)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-371, gnl|bosTau2|chr2 (70727696-70727392)
               

               
               66-371, gnl|Hg17|chr2 (230999970-231000280)
               

               
               66-371, gnl|Mm7|chr1 (85256098-85256374)
               


               
               676-1130, gnl|bosTau2|chr2 (70724883-70724469)
               

               
               676-1130, gnl|Hg17|chr2 (231002801-231003851)
               

               
               676-1130, gnl|Mm7|chr1 (85130954-85130510)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               col (0.195008)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)

	66-371, gnl\|bosTau2\|chr2 (70727696-70727392)
	66-371, gnl\|Hg17\|chr2 (230999970-231000280)
	66-371, gnl\|Mm7\|chr1 (85256098-85256374)

	676-1130, gnl\|bosTau2\|chr2 (70724883-70724469)
	676-1130, gnl\|Hg17\|chr2 (231002801-231003851)
	676-1130, gnl\|Mm7\|chr1 (85130954-85130510)

	col (0.195008)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	lnt (0.142308)
	jca (0.11396)