Ss1.1-rfhi4040b_l2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTGCATGGCCAATGGCCGTCCTGAACCTGTTATCACCTGGAGACACCTTACACCAACT GGAAGAGAACTTGAAGGAGAAGAAGAATATCTGGAGATCCTCGGCATCACCAGGGAGCAG TCAGGCAAATATGAGTGCAAAGCTGCCAATGAGGTCTCCTCGGCGGACGTCAAACAAGTC AAGGTCACTGTGAACTATCCTCCCACTATCACGGAATCCAAGAGCAATGAAGCCACCACA GGGCGAAAAGCTTCTCTCAAATGTGAGGCCTCGGCAGTGCCTGCTCCTGACTTTGAGTGG TACCGAGATGACACCAGGATAAACAGTGCCAATGGCCTTGAGATTAAGAGCACGGAGGGC CAGTCCTCCCTGACGGTGACCAACGTCACTGAGGAGCACTATGGCAACTACACCTGCGTG GCTGCCAACAATCTGGGGGTCACCAACGCCAGCCTCGTCCTTTTCAAGCGTGTTTTACCC ACAATCCCCCACCCCATTCAAGGATATGATCCCAGCTATCAATGAGAAGAAATTGGCACC ACCGTGCACTTCAAGCAAAAAGGACCTGGGTCGGTGAGAGGAATAAACGGATCCATCAGT CTGGCCGTACCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAA TAGAATAAAAGTTTCAAAAGAATTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTGCATGGCCAATGGCCGTCCTGAACCTGTTATCACCTGGAGACACCTTACACCAACT GGAAGAGAACTTGAAGGAGAAGAAGAATATCTGGAGATCCTCGGCATCACCAGGGAGCAG TCAGGCAAATATGAGTGCAAAGCTGCCAATGAGGTCTCCTCGGCGGACGTCAAACAAGTC AAGGTCACTGTGAACTATCCTCCCACTATCACGGAATCCAAGAGCAATGAAGCCACCACA GGGCGAAAAGCTTCTCTCAAATGTGAGGCCTCGGCAGTGCCTGCTCCTGACTTTGAGTGG TACCGAGATGACACCAGGATAAACAGTGCCAATGGCCTTGAGATTAAGAGCACGGAGGGC CAGTCCTCCCTGACGGTGACCAACGTCACTGAGGAGCACTATGGCAACTACACCTGCGTG GCTGCCAACAATCTGGGGGTCACCAACGCCAGCCTCGTCCTTTTCAAGCGTGTTTTACCC ACAATCCCCCACCCCATTCAAGGATATGATCCCAGCTATCAATGAGAAGAAATTGGCACC ACCGTGCACTTCAAGCAAAAAGGACCTGGGTCGGTGAGAGGAATAAACGGATCCATCAGT CTGGCCGTACCACTGTGGCTGCTGGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAA TAGAATAAAAGTTTCAAAAGAATTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 316-466, - strand, RNAz p=0.966758 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 316-466, - strand, RNAz p=0.966758 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 61-196, gnl|bosTau2|chr1 (35661052-35660917) | |
| 61-196, gnl|canFam2|chr33 (22925273-22925428) | |
| 61-196, gnl|danRer3|chr10 (31796160-31796037) | |
| 61-196, gnl|dasNov1|scaffold_2893 (44558-44404) | |
| 61-196, gnl|echTel1|scaffold_319636 (86509-86354) | |
| 61-196, gnl|fr1|chrUn (33847497-33847643) | |
| 61-196, gnl|galGal2|chr1 (76306771-76306616) | |
| 61-196, gnl|hg17|chr3 (117054012-117054167) | |
| 61-196, gnl|Hg17|chr3 (117054155-117054020) | |
| 61-196, gnl|loxAfr1|scaffold_24666 (2231-2366) | |
| 61-196, gnl|mm7|chr16 (41895130-41894975) | |
| 61-196, gnl|Mm7|chr16 (41894985-41895120) | |
| 61-196, gnl|monDom2|scaffold_24 (11318353-11318508) | |
| 61-196, gnl|oryCun1|scaffold_202141 (99852-100006) | |
| 61-196, gnl|panTro1|chr2 (118790958-118791113) | |
| 61-196, gnl|rheMac2|chr2 (35854074-35854229) | |
| 61-196, gnl|rn3|chr11 (60268915-60269070) | |
| 61-196, gnl|tetNig1|chr1 (12551445-12551592) | |
| 61-196, gnl|xenTro1|scaffold_775 (153516-153667) | |
| 316-466, gnl|bosTau2|chr1 (35650560-35650410) | |
| 316-466, gnl|canFam2|chr33 (22915125-22915323) | |
| 316-466, gnl|danRer3|chr16 (51893539-51893343) | |
| 316-466, gnl|dasNov1|scaffold_2893 (54819-54622) | |
| 316-466, gnl|echTel1|scaffold_319636 (97656-97457) | |
| 316-466, gnl|fr1|chrUn (110297908-110297724) | |
| 316-466, gnl|galGal2|chr1 (76311888-76311683) | |
| 316-466, gnl|hg17|chr3 (117043365-117043563) | |
| 316-466, gnl|Hg17|chr3 (117043532-117043382) | |
| 316-466, gnl|loxAfr1|scaffold_4087 (49528-49328) | |
| 316-466, gnl|mm7|chr16 (41905266-41905070) | |
| 316-466, gnl|Mm7|chr16 (41905097-41905247) | |
| 316-466, gnl|monDom2|scaffold_24 (11302357-11302549) | |
| 316-466, gnl|oryCun1|scaffold_202141 (89646-89842) | |
| 316-466, gnl|panTro1|chr2 (118780298-118780496) | |
| 316-466, gnl|rheMac2|chr2 (35843145-35843343) | |
| 316-466, gnl|rn3|chr11 (60258335-60258532) | |
| 316-466, gnl|tetNig1|chr1 (12541147-12541320) | |
| 316-466, gnl|xenTro1|scaffold_775 (149109-149298) | |
| 561-694, gnl|bosTau2|chr1 (35616220-35616087) | |
| 561-694, gnl|Hg17|chr3 (117011953-117011823) | |
| 561-694, gnl|Mm7|chr16 (41934690-41934820) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-196, gnl|bosTau2|chr1 (35661052-35660917) | |
| 61-196, gnl|canFam2|chr33 (22925273-22925428) | |
| 61-196, gnl|danRer3|chr10 (31796160-31796037) | |
| 61-196, gnl|dasNov1|scaffold_2893 (44558-44404) | |
| 61-196, gnl|echTel1|scaffold_319636 (86509-86354) | |
| 61-196, gnl|fr1|chrUn (33847497-33847643) | |
| 61-196, gnl|galGal2|chr1 (76306771-76306616) | |
| 61-196, gnl|hg17|chr3 (117054012-117054167) | |
| 61-196, gnl|Hg17|chr3 (117054155-117054020) | |
| 61-196, gnl|loxAfr1|scaffold_24666 (2231-2366) | |
| 61-196, gnl|mm7|chr16 (41895130-41894975) | |
| 61-196, gnl|Mm7|chr16 (41894985-41895120) | |
| 61-196, gnl|monDom2|scaffold_24 (11318353-11318508) | |
| 61-196, gnl|oryCun1|scaffold_202141 (99852-100006) | |
| 61-196, gnl|panTro1|chr2 (118790958-118791113) | |
| 61-196, gnl|rheMac2|chr2 (35854074-35854229) | |
| 61-196, gnl|rn3|chr11 (60268915-60269070) | |
| 61-196, gnl|tetNig1|chr1 (12551445-12551592) | |
| 61-196, gnl|xenTro1|scaffold_775 (153516-153667) | |
| 316-466, gnl|bosTau2|chr1 (35650560-35650410) | |
| 316-466, gnl|canFam2|chr33 (22915125-22915323) | |
| 316-466, gnl|danRer3|chr16 (51893539-51893343) | |
| 316-466, gnl|dasNov1|scaffold_2893 (54819-54622) | |
| 316-466, gnl|echTel1|scaffold_319636 (97656-97457) | |
| 316-466, gnl|fr1|chrUn (110297908-110297724) | |
| 316-466, gnl|galGal2|chr1 (76311888-76311683) | |
| 316-466, gnl|hg17|chr3 (117043365-117043563) | |
| 316-466, gnl|Hg17|chr3 (117043532-117043382) | |
| 316-466, gnl|loxAfr1|scaffold_4087 (49528-49328) | |
| 316-466, gnl|mm7|chr16 (41905266-41905070) | |
| 316-466, gnl|Mm7|chr16 (41905097-41905247) | |
| 316-466, gnl|monDom2|scaffold_24 (11302357-11302549) | |
| 316-466, gnl|oryCun1|scaffold_202141 (89646-89842) | |
| 316-466, gnl|panTro1|chr2 (118780298-118780496) | |
| 316-466, gnl|rheMac2|chr2 (35843145-35843343) | |
| 316-466, gnl|rn3|chr11 (60258335-60258532) | |
| 316-466, gnl|tetNig1|chr1 (12541147-12541320) | |
| 316-466, gnl|xenTro1|scaffold_775 (149109-149298) | |
| 561-694, gnl|bosTau2|chr1 (35616220-35616087) | |
| 561-694, gnl|Hg17|chr3 (117011953-117011823) | |
| 561-694, gnl|Mm7|chr16 (41934690-41934820) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| fhi (0.169578) |