Ss1.1-rfhi4040b_p18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGTGCAAACGCCCACTCCCCCAATCGGACCAGACGGCCGCCAAGGACGACCCCACCC AGCCACCACCCCACCCCCTGGGAAAGATGCCTTATTTCCTGTCCTCTTTCGGTATCTGCC CTTCCCAAACAAGCCCAAAGACAGCCACCAATCCACCGGGAACAAAGTCCCCGTAAGCCG CTCTCTTTTGATTTCTGCTGGTTAGAAACTCGCATTTCCACAACTCACCTGTTACCAGCC CAGTCACCTGCCGGGGACACGGCACCTCAGTAAGCAGAAGCCTGTGGGGCTGGGTCTAGG GTTGGCCAGCGGTGGTTTTCTGTTTCTCCAGCCGAGGTGAGGGGGACGGGGGTGCAAGAG TGGACCTTTGTGCTCTGGGGGTGATGTGCTCATGACCTCGTTTAATGGACACTTGCCTGC TGGACCCAGCTGACCAGATGACATATCTCTTGCAAAGTCACATGCTGACCTGGCCCTCCT CGGTGACAAGACAGGTCAGACGCCGCCCCCCCCCCCCAGGACCCCGCAGTATTGACAGGC AGTAGTGCCCCCAGCTTGGGGACCTTGGTCACTTCGACAGTAGCAGCTCTTTTTTTGTTT GCACTGTTTGTTTATACAGTAATGTTAGCTAATTCCACTGTGTATATAAATTGTATTTTT TTAATTTGTAAAATTCTATGTGTATTTGACTGTTGGAACTTGGAAGTTCTCGTTGTAACC GTAACACATCAGAATAAAGCGTCTTCATCCGTCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGTGCAAACGCCCACTCCCCCAATCGGACCAGACGGCCGCCAAGGACGACCCCACCC AGCCACCACCCCACCCCCTGGGAAAGATGCCTTATTTCCTGTCCTCTTTCGGTATCTGCC CTTCCCAAACAAGCCCAAAGACAGCCACCAATCCACCGGGAACAAAGTCCCCGTAAGCCG CTCTCTTTTGATTTCTGCTGGTTAGAAACTCGCATTTCCACAACTCACCTGTTACCAGCC CAGTCACCTGCCGGGGACACGGCACCTCAGTAAGCAGAAGCCTGTGGGGCTGGGTCTAGG GTTGGCCAGCGGTGGTTTTCTGTTTCTCCAGCCGAGGTGAGGGGGACGGGGGTGCAAGAG TGGACCTTTGTGCTCTGGGGGTGATGTGCTCATGACCTCGTTTAATGGACACTTGCCTGC TGGACCCAGCTGACCAGATGACATATCTCTTGCAAAGTCACATGCTGACCTGGCCCTCCT CGGTGACAAGACAGGTCAGACGCCGCCCCCCCCCCCCAGGACCCCGCAGTATTGACAGGC AGTAGTGCCCCCAGCTTGGGGACCTTGGTCACTTCGACAGTAGCAGCTCTTTTTTTGTTT GCACTGTTTGTTTATACAGTAATGTTAGCTAATTCCACTGTGTATATAAATTGTATTTTT TTAATTTGTAAAATTCTATGTGTATTTGACTGTTGGAACTTGGAAGTTCTCGTTGTAACC GTAACACATCAGAATAAAGCGTCTTCATCCGTCTCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 276-384, - strand, RNAz p=0.970116 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 276-384, - strand, RNAz p=0.970116 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 100-397, gnl|bosTau2|chr16 (21480454-21480154) | |
| 100-397, gnl|canFam2|chr2 (87295787-87295163) | |
| 100-397, gnl|dasNov1|scaffold_6045 (48696-48053) | |
| 100-397, gnl|echTel1|scaffold_323748 (47548-48081) | |
| 100-397, gnl|hg17|chr1 (11836274-11836969) | |
| 100-397, gnl|loxAfr1|scaffold_4106 (66021-65370) | |
| 100-397, gnl|mm7|chr4 (146994807-146994249) | |
| 100-397, gnl|Mm7|chr4 (146994478-146994156) | |
| 100-397, gnl|monDom2|scaffold_175 (255897-255067) | |
| 100-397, gnl|oryCun1|scaffold_185006 (13526-12873) | |
| 100-397, gnl|panTro1|chr1 (12052577-12053272) | |
| 100-397, gnl|rheMac2|chr1 (14944237-14944929) | |
| 100-397, gnl|rn3|chr5 (165089145-165088559) | |
| 405-756, gnl|bosTau2|chr16 (21479970-21479617) | |
| 405-756, gnl|canFam2|chr2 (87295060-87294796) | |
| 405-756, gnl|dasNov1|scaffold_6045 (47948-47720) | |
| 405-756, gnl|echTel1|scaffold_323748 (48169-48356) | |
| 405-756, gnl|hg17|chr1 (11837087-11837348) | |
| 405-756, gnl|Hg17|chr1 (11837105-11837463) | |
| 405-756, gnl|loxAfr1|scaffold_4106 (65274-65025) | |
| 405-756, gnl|mm7|chr4 (146994148-146993913) | |
| 405-756, gnl|Mm7|chr4 (146994133-146993804) | |
| 405-756, gnl|monDom2|scaffold_175 (254939-254671) | |
| 405-756, gnl|oryCun1|scaffold_185006 (12749-12536) | |
| 405-756, gnl|panTro1|chr1 (12053390-12053651) | |
| 405-756, gnl|rheMac2|chr1 (14945047-14945302) | |
| 405-756, gnl|rn3|chr5 (165088473-165088227) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-397, gnl|bosTau2|chr16 (21480454-21480154) | |
| 100-397, gnl|canFam2|chr2 (87295787-87295163) | |
| 100-397, gnl|dasNov1|scaffold_6045 (48696-48053) | |
| 100-397, gnl|echTel1|scaffold_323748 (47548-48081) | |
| 100-397, gnl|hg17|chr1 (11836274-11836969) | |
| 100-397, gnl|loxAfr1|scaffold_4106 (66021-65370) | |
| 100-397, gnl|mm7|chr4 (146994807-146994249) | |
| 100-397, gnl|Mm7|chr4 (146994478-146994156) | |
| 100-397, gnl|monDom2|scaffold_175 (255897-255067) | |
| 100-397, gnl|oryCun1|scaffold_185006 (13526-12873) | |
| 100-397, gnl|panTro1|chr1 (12052577-12053272) | |
| 100-397, gnl|rheMac2|chr1 (14944237-14944929) | |
| 100-397, gnl|rn3|chr5 (165089145-165088559) | |
| 405-756, gnl|bosTau2|chr16 (21479970-21479617) | |
| 405-756, gnl|canFam2|chr2 (87295060-87294796) | |
| 405-756, gnl|dasNov1|scaffold_6045 (47948-47720) | |
| 405-756, gnl|echTel1|scaffold_323748 (48169-48356) | |
| 405-756, gnl|hg17|chr1 (11837087-11837348) | |
| 405-756, gnl|Hg17|chr1 (11837105-11837463) | |
| 405-756, gnl|loxAfr1|scaffold_4106 (65274-65025) | |
| 405-756, gnl|mm7|chr4 (146994148-146993913) | |
| 405-756, gnl|Mm7|chr4 (146994133-146993804) | |
| 405-756, gnl|monDom2|scaffold_175 (254939-254671) | |
| 405-756, gnl|oryCun1|scaffold_185006 (12749-12536) | |
| 405-756, gnl|panTro1|chr1 (12053390-12053651) | |
| 405-756, gnl|rheMac2|chr1 (14945047-14945302) | |
| 405-756, gnl|rn3|chr5 (165088473-165088227) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| ecc (0.115035) |